get_info_table: Get information table

In pedrostrusso/annotator: Automatic annotation of GEO studies

Description

Get information table

Usage

get_info_table(check_dir, func_name = c("rand", "fnr", "fpr", "tpr"),
  true_col = "TRUE_col", methods = c("jaro", "jw", "sw", "nw", "me",
  "lv", "dl", "osa", "lcs", "qgram", "cosine", "jaccard"))

Arguments

check_dir	folder containing studies
func_name	a character string indicating a function for calculations. One of "rand", "fnr", "fpr" or "tpr".
true_col	character string indicating the column containing the true (manual) annotation of the samples
methods	the methods to evaluate. Default is all of ("jaro", "jw", "sw1", "nw1", "nw3", "me", "lv","dl", "osa", "lcs", "qgram", "cosine", "jaccard")

Value

a data.frame containing the specified calculation for each study using each method

pedrostrusso/annotator documentation built on June 12, 2019, 11:23 a.m.