label_annot: Automatic label creation

In pedrostrusso/annotator: Automatic annotation of GEO studies

Description

Automatic label creation

Usage

label_annot(annot0, method = "all")

Arguments

annot0	Sample annotation data.frame with a column called "mega_col" to infer labels from.
method	Character string corresponding to a method to create the labels by. One of "all", "common", "unique", "lcsubstr", "lcsubseq". See Details.

Details

The methods available for defining class labels are as follows:

• all Return all labelling methods.

• common Strings shared by all instances of a class

• unique Strings unique to the instances of a particular class

• lcsubstr Longest common substring in a class

• lcsubseq Longest common subsequence in a class

pedrostrusso/annotator documentation built on June 12, 2019, 11:23 a.m.