Man pages for perishky/ewaff
Efficient and Flexible EWAS
| ewaff.covariate.associations | Describe associations between covariates and the variable of... |
| ewaff.cpg.summary | Summarize CpG distributions |
| ewaff.glm.plot | Plots GLM regression of a CpG site |
| ewaff.glm.residuals.plot | Plots GLM regression residuals vs fitted values for a CpG... |
| ewaff.handle.outliers | Handle outliers |
| ewaff.manhattan.plot | Manhattan plot |
| ewaff.meta.sites | ewaff.meta.sites |
| ewaff.qq.plot | QQ plot |
| ewaff.report | Generate CpG associations report |
| ewaff.report.parameters | Specify parameters for report |
| ewaff.sample.characteristics | Describe samples using the variable of interest and... |
| ewaff.sites | Test associations at CpG sites |
| ewaff.summarize.relationship | Describe the relationship between two variables. |
| ewaff.summary | Summarize results. |
| ewaff.sva | Generate surrogate variables using the ewaff.sites syntax |
| knit.report | Knit report using working environment |
| scatter.thinning | Remove points from a scatter plot where density is really... |
