ewaff.glm.plot: Plots GLM regression of a CpG site

In perishky/ewaff: Efficient and Flexible EWAS

Plots GLM regression of a CpG site

Description

Plots GLM regression of a CpG site

Usage

ewaff.glm.plot(
  variable.of.interest,
  data,
  methylation,
  title,
  bp.threshold = 20
)

Arguments

variable.of.interest	Name in colnames(data) for the variable of interest.
data	Data frame containing all variables.
methylation	Vector of methylation levels.
title	Title of the plot.
ggplot	object showing the scatterplots (for continuous variables) or boxplots (for categorical variables) of methylation vs the variable of interest. Each plot corresponds to a covariate set. Methylation levels are in fact residuals from fitting a model with DNA methylation and the covariates.

perishky/ewaff documentation built on Jan. 31, 2024, 11:29 p.m.