ewaff.cpg.summary: Summarize CpG distributions
In perishky/ewaff: Efficient and Flexible EWAS
ewaff.cpg.summary R Documentation
Summarize CpG distributions
Description
Summarize CpG site quantiles (0, 10, 15, 50, 75, 90, 100), the
mean, and SD.
Usage
ewaff.cpg.summary(methylation, cpgs.are.rows = T)
Arguments
methylation
DNA methylation matrix, one row per CpG site,
one column per sample.
cpgs.are.rows
logical argument to allow CpG sites to be in
columns instead of rows.
...
Arguments to glm.
Value
matrix with columns of each requested summary statistics
and row for each CpG in methylation
perishky/ewaff documentation built on Jan. 31, 2024, 11:29 p.m.
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| ewaff.cpg.summary | R Documentation |
Summarize CpG distributions
Description
Summarize CpG site quantiles (0, 10, 15, 50, 75, 90, 100), the mean, and SD.
Usage
ewaff.cpg.summary(methylation, cpgs.are.rows = T)
Arguments
methylation |
DNA methylation matrix, one row per CpG site, one column per sample. |
cpgs.are.rows |
logical argument to allow CpG sites to be in columns instead of rows. |
... |
Arguments to |
Value
matrix with columns of each requested summary statistics
and row for each CpG in methylation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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