ewaff.summary | R Documentation |
Generates variable and covariate summary tables, QQ plots, Manhattan plots, a list of associations, plots of the strongest associations and plots of selected CpG sites.
ewaff.summary(
object,
chr,
pos,
methylation,
selected.cpg.sites = character(0),
additional.variables = NULL,
parameters = ewaff.report.parameters(),
verbose = T
)
object |
Object returned by |
chr |
Chromosome of each CpG site in |
pos |
Position of each CpG site. |
methylation |
Matrix of methylation levels used in the analysis. |
selected.cpg.sites |
Vector of CpG site names to plot (Default: character(0)). |
additional.variables |
A data frame of variables to show associations with the variable of interest. |
parameters |
Default = ewaff.report.parameters(). List of parameter values.
See |
List
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