ewaff.summary: Summarize results.

In perishky/ewaff: Efficient and Flexible EWAS

Summarize results.

Description

Generates variable and covariate summary tables, QQ plots, Manhattan plots, a list of associations, plots of the strongest associations and plots of selected CpG sites.

Usage

ewaff.summary(
  object,
  chr,
  pos,
  methylation,
  selected.cpg.sites = character(0),
  additional.variables = NULL,
  parameters = ewaff.report.parameters(),
  verbose = T
)

Arguments

object	Object returned by ewaff.sites.
chr	Chromosome of each CpG site in methylation.
pos	Position of each CpG site.
methylation	Matrix of methylation levels used in the analysis.
selected.cpg.sites	Vector of CpG site names to plot (Default: character(0)).
additional.variables	A data frame of variables to show associations with the variable of interest.
parameters	Default = ewaff.report.parameters(). List of parameter values. See ewaff.report.parameters().

Value

List

perishky/ewaff documentation built on Jan. 31, 2024, 11:29 p.m.