ewaff.summary: Summarize results.

View source: R/report.r

ewaff.summaryR Documentation

Summarize results.

Description

Generates variable and covariate summary tables, QQ plots, Manhattan plots, a list of associations, plots of the strongest associations and plots of selected CpG sites.

Usage

ewaff.summary(
  object,
  chr,
  pos,
  methylation,
  selected.cpg.sites = character(0),
  additional.variables = NULL,
  parameters = ewaff.report.parameters(),
  verbose = T
)

Arguments

object

Object returned by ewaff.sites.

chr

Chromosome of each CpG site in methylation.

pos

Position of each CpG site.

methylation

Matrix of methylation levels used in the analysis.

selected.cpg.sites

Vector of CpG site names to plot (Default: character(0)).

additional.variables

A data frame of variables to show associations with the variable of interest.

parameters

Default = ewaff.report.parameters(). List of parameter values. See ewaff.report.parameters().

Value

List


perishky/ewaff documentation built on Nov. 10, 2024, 4:53 p.m.