run_sim: Run Simulation
In peterkuriyama/hlsimulator: Simulate Hook and Line Survey

Define arguments for hook and line simulations; arguments the same as make_ctl function Used in initialize_population

run_sim(numrow = 10, numcol = 10, nfish = 10000, distribute = "uniform",
  maxfish = 10, percent = 0.3, area = NULL, seed = 300,
  location = data.frame(vessel = c(1, 1, 2), x = c(3, 3, 8), y = c(3, 5, 8)),
  scope = 1, nhooks = 5, ndrops = 5, process = "equal_prob", p0 = 0.4,
  nyear = 10, browser = FALSE, cpue_method = "average")

`numrow`	Number of rows in matrix
`numcol`	Number of columns in matrix
`nfish`	Number of fish to allocate among matrix
`distribute`	Specify fish distribution to be 'uniform', 'patchy', or 'area' specific
`maxfish`	Maximum number of fish that can be sampled at a time; default is 10
`percent`	percentage of area to sample. Only necessary if distribute == 'patchy'; default is 0.3
`area`	Specify area to distribute fish, options are 'upperleft', 'upperright', 'lowerleft', 'lowerright', 'upperhalf', 'lowerhalf', 'righthalf', 'lefthalf' Only necessary if distribute == 'area'
`seed`	Set seed if distribute == random, defaults to 300
`location`	Data frame of locations with column for vessel, rows, and columns of fish are to fish in.
`scope`	the scope of fishing movement, default to 1 so fish in surrounding 1 cells can move in; default is 1
`nhooks`	number of hooks at the smallest sampling size; default is 5
`ndrops`	number of drops, default is 5 following hook and line protocol; default is 5
`process`	specify process by which fish are sampled, options are 'multinomial', 'hypergeometric', and 'equal_prob'. 'equal_prob' is based on CIE comments from 2012.
`p0`	Probability that fish detects gear, used in the hook_prob function; default is 0.4
`nyear`	Number of years in survey; default is 10
`browser`	Switch to turn on browser for debugging
`cpue_method`	Method of aggregating cpue. For use in calc_cpue function. Currently options are 'average', '75hooks' to aggregate by hooks, and 'weighted_average' is in development