mating_tensor: Comptue the Mating Tensor for a Set of Genotypes.

In petrelharp/landsim: Simulate Populations on Landscapes

Description

This returns the three-dimensional array whose [i,j,k]th entry is the probability that maternal genotype i and paternal genotype j combine to make offspring genotype k

Usage

mating_tensor(maternal, paternal = maternal, offspring = maternal,
  sep = "", phased = FALSE)

Arguments

maternal	Character vector of genotypes.
paternal	Character vector of genotypes. [default: same as maternal]
offspring	Character vector of genotypes. [default: same as maternal]
sep	Character separating the two alleles. [default: ”]
phased	Does order matter for the diploid genotypes?

Value

A three-dimensional array, with dimnames. If phased is FALSE then the two paternal alleles are sorted before being combined together into the offspring diploid genotype.

petrelharp/landsim documentation built on May 25, 2019, 2:53 a.m.