Man pages for petrelharp/landsim
Simulate Populations on Landscapes
| aggregate_migration | Aggregate a Migration Matrix to Match a Coarser Raster |
| as.list.vital | Set Up a Vital Rates Function With Parameters |
| backmeiosis | Sample from Parental Genotypes |
| backmigrate | Sample from Parental Locations |
| census_neighborhoods | Construct Census Functions for a Set of Neighborhoods |
| crop_population | Crop a Population |
| crop_simulation | Crop a Simulation |
| demography | Construct a 'demography' Object. |
| discretize_kernel | Create a "Discretized" Migration Function from a Continuous... |
| dispersal_distance | Estimate the Root Mean Square Dispersal Distance from a... |
| extend_simulation | Continue a Previously Initiated Simulation |
| flat_habitat | Create a Flat Habitat |
| generation | Simulate a Single Generation. |
| generation_raster | Apply a 'demography' Object to a Raster |
| geo_power | Take a Geometric Power of a Matrix |
| getElement.vital | Assign or Extract Items from the Environment of a Vital... |
| get_N | Access Values of Habitable Cells in a Population |
| habitable_points | Find Points Corresponding to Habitable Cells |
| intrinsic_growth | Find the Intrinsic Growth Rate for Each Genotype |
| layer_adjacency | Adjacency Matrix from a Raster Layer. |
| lineage_generation | Simulate a Single Backwards Generation |
| make_circles | Make Circles Centered at a Collection of Coordinates |
| make_population | Set Up a Population from a Configuration |
| mating_tensor | Comptue the Mating Tensor for a Set of Genotypes. |
| migrate | Migrate the Quantities in a Population. |
| migrate_raster | Migrate the Quantities in a Raster. |
| migration | Construct a 'migration' Object. |
| migration_matrix | Create Migration Matrix from a Migration object and a... |
| names.vital | Extract Names of Objects in Environment of a vital Function |
| nhabitable | Number of Habitable Cells in a Population. |
| plot_lineages | Plot Lineages on a Map |
| plot.population | Plot a Population |
| plot.simulation | Animate a Simulation |
| pop_to_raster | Convert a population to a RasterBrick. |
| population | Construct a 'population' Object. |
| random_habitat | Simulate a Random Habitat |
| rbinom_matrix | Sample from a Binomial, Preserving Dimension |
| rbinom_raster | Sample Binomial Values in a Raster* or Population |
| rpois_matrix | Sample from a Poisson, Preserving Dimension |
| rpois_raster | Sample Poisson Raster |
| sample_neighborhoods | Sample Neighborhoods in a Raster* |
| seed_production | Mean Seed Production |
| seed_production_raster | Mean Seed Production |
| select_clumps | Divide a Raster into Regions Separated by a Minimum Distance |
| set_N | Assign Values to Habitable Cells in a Population |
| setup_demography | Set up a Demography Object for a Concrete Population |
| setup_migration | Set up Migration Object for a Concrete Population |
| setup_vital | Set up a Vital Function for a Concrete Population |
| sierpinski_overlay | Overlay a Raster with a Sierpinski Mask |
| sim_to_brick | Convert Simulation Array to RasterBrick(s). |
| simulate_lineages | Simulate Lineages |
| simulate_pop | Simulate Many Generations |
| subset_migration | Subset a Migration Matrix to Match a Smaller Raster of the... |
| values.population | Extract Matrix of Genotype Counts |
| vital | Set Up a Vital Rates Function With Parameters |
| write_triplets | Write out a Sparse Matrix in Triplet Form |
