Simulate Populations on Landscapes

aggregate_migration | Aggregate a Migration Matrix to Match a Coarser Raster |

as.list.vital | Set Up a Vital Rates Function With Parameters |

backmeiosis | Sample from Parental Genotypes |

backmigrate | Sample from Parental Locations |

census_neighborhoods | Construct Census Functions for a Set of Neighborhoods |

crop_population | Crop a Population |

crop_simulation | Crop a Simulation |

demography | Construct a 'demography' Object. |

discretize_kernel | Create a "Discretized" Migration Function from a Continuous... |

dispersal_distance | Estimate the Root Mean Square Dispersal Distance from a... |

extend_simulation | Continue a Previously Initiated Simulation |

flat_habitat | Create a Flat Habitat |

generation | Simulate a Single Generation. |

generation_raster | Apply a 'demography' Object to a Raster |

geo_power | Take a Geometric Power of a Matrix |

getElement.vital | Assign or Extract Items from the Environment of a Vital... |

get_N | Access Values of Habitable Cells in a Population |

habitable_points | Find Points Corresponding to Habitable Cells |

intrinsic_growth | Find the Intrinsic Growth Rate for Each Genotype |

layer_adjacency | Adjacency Matrix from a Raster Layer. |

lineage_generation | Simulate a Single Backwards Generation |

make_circles | Make Circles Centered at a Collection of Coordinates |

make_population | Set Up a Population from a Configuration |

mating_tensor | Comptue the Mating Tensor for a Set of Genotypes. |

migrate | Migrate the Quantities in a Population. |

migrate_raster | Migrate the Quantities in a Raster. |

migration | Construct a 'migration' Object. |

migration_matrix | Create Migration Matrix from a Migration object and a... |

names.vital | Extract Names of Objects in Environment of a vital Function |

nhabitable | Number of Habitable Cells in a Population. |

plot_lineages | Plot Lineages on a Map |

plot.population | Plot a Population |

plot.simulation | Animate a Simulation |

pop_to_raster | Convert a population to a RasterBrick. |

population | Construct a 'population' Object. |

random_habitat | Simulate a Random Habitat |

rbinom_matrix | Sample from a Binomial, Preserving Dimension |

rbinom_raster | Sample Binomial Values in a Raster* or Population |

rpois_matrix | Sample from a Poisson, Preserving Dimension |

rpois_raster | Sample Poisson Raster |

sample_neighborhoods | Sample Neighborhoods in a Raster* |

seed_production | Mean Seed Production |

seed_production_raster | Mean Seed Production |

select_clumps | Divide a Raster into Regions Separated by a Minimum Distance |

set_N | Assign Values to Habitable Cells in a Population |

setup_demography | Set up a Demography Object for a Concrete Population |

setup_migration | Set up Migration Object for a Concrete Population |

setup_vital | Set up a Vital Function for a Concrete Population |

sierpinski_overlay | Overlay a Raster with a Sierpinski Mask |

sim_to_brick | Convert Simulation Array to RasterBrick(s). |

simulate_lineages | Simulate Lineages |

simulate_pop | Simulate Many Generations |

subset_migration | Subset a Migration Matrix to Match a Smaller Raster of the... |

values.population | Extract Matrix of Genotype Counts |

vital | Set Up a Vital Rates Function With Parameters |

write_triplets | Write out a Sparse Matrix in Triplet Form |

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