simulate_pop: Simulate Many Generations
In petrelharp/landsim: Simulate Populations on Landscapes

Description Usage Arguments Value Functions

This steps a population forwards by many generations, according to the parameters in a demography object, returning the result at specified times in an array.

simulate_pop(population, demography, times, N = population$N, tinit = 0,
  summary.times = 1:max(times), summaries = NULL, stop.fun = NULL,
  return.everything = FALSE, ...)

simulation(N, summaries, times, summary.times, t, ...)

`population`	A `population` object, the initial state (t=0) of the population.
`demography`	A `demography` object, containing the below parameters.
`times`	A sorted integer vector of times to record the full state of the population at.
`N`	Overrides the matrix of genotype counts in `population`, if present.
`tinit`	The current time at the beginning of the simulation (defaults to t=0).
`summary.times`	A sorted integer vector of times to record summaries of the population at.
`summaries`	A list of functions to apply to the matrix of genotype counts, population$N, at generations `summary.times`.
`stop.fun`	A function applied to N that, if it returns TRUE, will stop the simulation. (remainder of output array will be entirely zeros)
`return.everything`	Whether to record 'everything' as returned by `generation()`.
`...`	Additional parameters that will be passed to `generation()`.

A named list, with elements N = an array with dimensions as population$N x length(times). summaries = A list of matrices, with dimensions (length of summary.times) x (length of output of summary function). times = As in the input. summary.times = As in the input. t = The final generation. and furthermore, if return.everything is TRUE, then gens = a list whose elements are as output by generation(...,return.everything=TRUE).