context("Test reading in trees.")
# the last tree is bad (due to ms segfault)
suppressWarnings( expect_warning( trees <- trees_from_ms("bad_trees.txt"), "skipping 1 bad trees") )
expected <- list(structure(list(edge = structure(c(271L, 272L, 273L, 274L,
274L, 275L, 275L, 273L, 276L, 276L, 277L, 278L, 278L, 279L, 279L,
277L, 280L, 281L, 281L, 280L, 282L, 283L, 283L, 284L, 284L, 285L,
285L, 282L, 286L, 287L, 287L, 288L, 289L, 289L, 288L, 290L, 290L,
291L, 291L, 286L, 292L, 293L, 293L, 294L, 294L, 295L, 295L, 296L,
297L, 297L, 296L, 298L, 298L, 299L, 299L, 292L, 300L, 300L, 272L,
301L, 302L, 302L, 303L, 303L, 301L, 304L, 305L, 305L, 304L, 306L,
307L, 307L, 306L, 308L, 308L, 309L, 309L, 271L, 310L, 311L, 311L,
312L, 313L, 314L, 314L, 315L, 316L, 316L, 317L, 317L, 318L, 318L,
315L, 319L, 319L, 313L, 320L, 321L, 322L, 322L, 323L, 323L, 321L,
324L, 325L, 325L, 324L, 326L, 326L, 327L, 327L, 328L, 328L, 320L,
329L, 329L, 330L, 330L, 331L, 331L, 312L, 332L, 333L, 334L, 334L,
333L, 335L, 335L, 332L, 336L, 336L, 337L, 337L, 338L, 339L, 339L,
340L, 341L, 341L, 342L, 342L, 343L, 344L, 344L, 345L, 345L, 343L,
346L, 346L, 340L, 347L, 347L, 338L, 348L, 348L, 349L, 350L, 351L,
351L, 350L, 352L, 352L, 349L, 353L, 354L, 354L, 355L, 355L, 356L,
356L, 357L, 357L, 353L, 358L, 358L, 359L, 359L, 360L, 360L, 310L,
361L, 362L, 363L, 364L, 365L, 365L, 366L, 367L, 367L, 366L, 368L,
368L, 369L, 369L, 364L, 370L, 370L, 371L, 372L, 372L, 373L, 373L,
374L, 375L, 375L, 374L, 376L, 376L, 377L, 378L, 379L, 379L, 380L,
380L, 378L, 381L, 381L, 377L, 382L, 382L, 371L, 383L, 383L, 384L,
385L, 385L, 386L, 386L, 384L, 387L, 387L, 363L, 388L, 389L, 390L,
391L, 391L, 390L, 392L, 392L, 393L, 393L, 389L, 394L, 394L, 388L,
395L, 396L, 396L, 397L, 397L, 395L, 398L, 398L, 399L, 400L, 400L,
401L, 402L, 402L, 403L, 403L, 404L, 404L, 401L, 405L, 406L, 406L,
407L, 407L, 405L, 408L, 409L, 409L, 408L, 410L, 411L, 411L, 412L,
412L, 410L, 413L, 413L, 414L, 414L, 399L, 415L, 415L, 362L, 416L,
417L, 417L, 416L, 418L, 419L, 420L, 420L, 419L, 421L, 421L, 422L,
423L, 423L, 424L, 424L, 425L, 425L, 426L, 426L, 427L, 427L, 428L,
428L, 429L, 430L, 431L, 432L, 432L, 431L, 433L, 433L, 434L, 434L,
430L, 435L, 436L, 436L, 437L, 438L, 438L, 439L, 439L, 437L, 440L,
441L, 442L, 442L, 443L, 443L, 444L, 444L, 441L, 445L, 446L, 446L,
447L, 447L, 445L, 448L, 449L, 449L, 448L, 450L, 450L, 440L, 451L,
451L, 452L, 453L, 453L, 452L, 454L, 454L, 455L, 455L, 456L, 456L,
435L, 457L, 458L, 459L, 459L, 460L, 460L, 458L, 461L, 461L, 457L,
462L, 462L, 463L, 464L, 464L, 465L, 465L, 463L, 466L, 466L, 429L,
467L, 467L, 468L, 468L, 469L, 469L, 422L, 470L, 470L, 418L, 471L,
472L, 473L, 473L, 474L, 475L, 476L, 476L, 475L, 477L, 478L, 478L,
477L, 479L, 479L, 480L, 480L, 481L, 481L, 482L, 482L, 474L, 483L,
483L, 484L, 484L, 472L, 485L, 486L, 486L, 487L, 487L, 485L, 488L,
489L, 489L, 488L, 490L, 490L, 471L, 491L, 491L, 361L, 492L, 492L,
493L, 494L, 494L, 495L, 496L, 496L, 497L, 497L, 495L, 498L, 498L,
499L, 500L, 500L, 499L, 501L, 502L, 503L, 503L, 504L, 504L, 502L,
505L, 505L, 506L, 506L, 501L, 507L, 508L, 509L, 509L, 508L, 510L,
510L, 507L, 511L, 511L, 512L, 512L, 513L, 513L, 493L, 514L, 515L,
515L, 516L, 517L, 517L, 518L, 518L, 516L, 519L, 519L, 520L, 521L,
521L, 522L, 522L, 520L, 523L, 523L, 514L, 524L, 525L, 525L, 524L,
526L, 526L, 527L, 527L, 528L, 529L, 530L, 530L, 531L, 531L, 529L,
532L, 532L, 533L, 533L, 528L, 534L, 535L, 535L, 534L, 536L, 536L,
537L, 537L, 538L, 538L, 539L, 539L, 272L, 273L, 274L, 1L, 275L,
2L, 3L, 276L, 4L, 277L, 278L, 5L, 279L, 6L, 7L, 280L, 281L, 8L,
9L, 282L, 283L, 10L, 284L, 11L, 285L, 12L, 13L, 286L, 287L, 14L,
288L, 289L, 15L, 16L, 290L, 17L, 291L, 18L, 19L, 292L, 293L,
20L, 294L, 21L, 295L, 22L, 296L, 297L, 23L, 24L, 298L, 25L, 299L,
26L, 27L, 300L, 28L, 29L, 301L, 302L, 30L, 303L, 31L, 32L, 304L,
305L, 33L, 34L, 306L, 307L, 35L, 36L, 308L, 37L, 309L, 38L, 39L,
310L, 311L, 40L, 312L, 313L, 314L, 41L, 315L, 316L, 42L, 317L,
43L, 318L, 44L, 45L, 319L, 46L, 47L, 320L, 321L, 322L, 48L, 323L,
49L, 50L, 324L, 325L, 51L, 52L, 326L, 53L, 327L, 54L, 328L, 55L,
56L, 329L, 57L, 330L, 58L, 331L, 59L, 60L, 332L, 333L, 334L,
61L, 62L, 335L, 63L, 64L, 336L, 65L, 337L, 66L, 338L, 339L, 67L,
340L, 341L, 68L, 342L, 69L, 343L, 344L, 70L, 345L, 71L, 72L,
346L, 73L, 74L, 347L, 75L, 76L, 348L, 77L, 349L, 350L, 351L,
78L, 79L, 352L, 80L, 81L, 353L, 354L, 82L, 355L, 83L, 356L, 84L,
357L, 85L, 86L, 358L, 87L, 359L, 88L, 360L, 89L, 90L, 361L, 362L,
363L, 364L, 365L, 91L, 366L, 367L, 92L, 93L, 368L, 94L, 369L,
95L, 96L, 370L, 97L, 371L, 372L, 98L, 373L, 99L, 374L, 375L,
100L, 101L, 376L, 102L, 377L, 378L, 379L, 103L, 380L, 104L, 105L,
381L, 106L, 107L, 382L, 108L, 109L, 383L, 110L, 384L, 385L, 111L,
386L, 112L, 113L, 387L, 114L, 115L, 388L, 389L, 390L, 391L, 116L,
117L, 392L, 118L, 393L, 119L, 120L, 394L, 121L, 122L, 395L, 396L,
123L, 397L, 124L, 125L, 398L, 126L, 399L, 400L, 127L, 401L, 402L,
128L, 403L, 129L, 404L, 130L, 131L, 405L, 406L, 132L, 407L, 133L,
134L, 408L, 409L, 135L, 136L, 410L, 411L, 137L, 412L, 138L, 139L,
413L, 140L, 414L, 141L, 142L, 415L, 143L, 144L, 416L, 417L, 145L,
146L, 418L, 419L, 420L, 147L, 148L, 421L, 149L, 422L, 423L, 150L,
424L, 151L, 425L, 152L, 426L, 153L, 427L, 154L, 428L, 155L, 429L,
430L, 431L, 432L, 156L, 157L, 433L, 158L, 434L, 159L, 160L, 435L,
436L, 161L, 437L, 438L, 162L, 439L, 163L, 164L, 440L, 441L, 442L,
165L, 443L, 166L, 444L, 167L, 168L, 445L, 446L, 169L, 447L, 170L,
171L, 448L, 449L, 172L, 173L, 450L, 174L, 175L, 451L, 176L, 452L,
453L, 177L, 178L, 454L, 179L, 455L, 180L, 456L, 181L, 182L, 457L,
458L, 459L, 183L, 460L, 184L, 185L, 461L, 186L, 187L, 462L, 188L,
463L, 464L, 189L, 465L, 190L, 191L, 466L, 192L, 193L, 467L, 194L,
468L, 195L, 469L, 196L, 197L, 470L, 198L, 199L, 471L, 472L, 473L,
200L, 474L, 475L, 476L, 201L, 202L, 477L, 478L, 203L, 204L, 479L,
205L, 480L, 206L, 481L, 207L, 482L, 208L, 209L, 483L, 210L, 484L,
211L, 212L, 485L, 486L, 213L, 487L, 214L, 215L, 488L, 489L, 216L,
217L, 490L, 218L, 219L, 491L, 220L, 221L, 492L, 222L, 493L, 494L,
223L, 495L, 496L, 224L, 497L, 225L, 226L, 498L, 227L, 499L, 500L,
228L, 229L, 501L, 502L, 503L, 230L, 504L, 231L, 232L, 505L, 233L,
506L, 234L, 235L, 507L, 508L, 509L, 236L, 237L, 510L, 238L, 239L,
511L, 240L, 512L, 241L, 513L, 242L, 243L, 514L, 515L, 244L, 516L,
517L, 245L, 518L, 246L, 247L, 519L, 248L, 520L, 521L, 249L, 522L,
250L, 251L, 523L, 252L, 253L, 524L, 525L, 254L, 255L, 526L, 256L,
527L, 257L, 528L, 529L, 530L, 258L, 531L, 259L, 260L, 532L, 261L,
533L, 262L, 263L, 534L, 535L, 264L, 265L, 536L, 266L, 537L, 267L,
538L, 268L, 539L, 269L, 270L), .Dim = c(538L, 2L)), Nnode = 269L,
tip.label = c("180", "72", "262", "223", "206", "26", "219",
"40", "71", "224", "116", "23", "134", "90", "19", "56",
"261", "55", "60", "63", "37", "86", "126", "210", "20",
"9", "36", "8", "239", "127", "139", "247", "115", "256",
"91", "92", "193", "144", "231", "158", "101", "81", "100",
"148", "205", "121", "192", "201", "54", "249", "157", "168",
"234", "220", "18", "269", "105", "110", "47", "64", "30",
"170", "59", "226", "140", "41", "162", "166", "17", "77",
"133", "208", "174", "252", "24", "257", "51", "119", "177",
"53", "260", "65", "113", "52", "49", "238", "11", "156",
"73", "136", "44", "67", "95", "137", "6", "75", "236", "194",
"152", "88", "195", "161", "228", "142", "187", "202", "211",
"45", "266", "35", "218", "48", "83", "68", "143", "43",
"184", "15", "159", "197", "114", "171", "29", "57", "145",
"94", "178", "188", "150", "80", "146", "217", "58", "232",
"209", "214", "196", "2", "138", "204", "61", "62", "87",
"182", "128", "233", "1", "39", "230", "25", "84", "78",
"222", "199", "183", "34", "50", "13", "21", "93", "129",
"103", "160", "198", "147", "229", "149", "270", "165", "130",
"175", "16", "215", "163", "267", "255", "98", "123", "99",
"245", "108", "112", "31", "109", "169", "118", "189", "244",
"246", "132", "172", "89", "167", "102", "104", "10", "14",
"22", "97", "259", "33", "74", "32", "176", "46", "4", "66",
"28", "69", "242", "141", "250", "251", "124", "225", "181",
"254", "3", "154", "7", "151", "155", "203", "213", "42",
"265", "125", "240", "263", "221", "216", "253", "212", "179",
"185", "106", "122", "153", "248", "135", "241", "190", "235",
"186", "117", "70", "111", "191", "79", "38", "85", "131",
"164", "227", "243", "268", "120", "264", "12", "237", "258",
"27", "82", "107", "207", "96", "200", "5", "76", "173"),
edge.length = c(20204842, 2860616, 1751492.375, 28630.152,
332.461, 28297.691, 28297.691, 621450, 1158672.5, 222592.062,
778069.5, 158010.922, 1110.672, 156900.25, 156900.25, 514857.156,
305321.531, 115901.758, 115901.758, 40138.719, 204530.656,
176553.906, 91296.828, 85257.078, 3852.359, 81404.719, 81404.719,
628.594, 266669.781, 113786.188, 432.664, 64246.988, 49106.535,
49106.535, 90.656, 113262.867, 82379.891, 30882.977, 30882.977,
127156.453, 197832.719, 55466.793, 700.785, 54766.008, 395.402,
54370.605, 30375.877, 20260.908, 3733.82, 3733.82, 57.609,
23937.119, 64.406, 23872.713, 23872.713, 115221.047, 138078.469,
138078.469, 2676529.75, 1034938.5, 929270.25, 796335, 132935.219,
132935.219, 80046.25, 1316098.625, 568063.875, 568063.875,
1086335.25, 761201.875, 36625.445, 36625.445, 153552.062,
644275.25, 640408.125, 3867.116, 3867.116, 19467366, 4482300,
895913.875, 347214.75, 27770.25, 137454.688, 383474.188,
37840.719, 341766.312, 3867.161, 0.067, 3867.094, 0.001,
3867.092, 3867.092, 283350, 62283.48, 62283.48, 8554.562,
311643.031, 96768.93, 103962.352, 389.141, 103573.211, 103573.211,
1195.656, 1934.531, 197601.094, 197601.094, 1359.109, 198176.516,
31640.516, 166536, 14923.984, 151612.016, 151612.016, 280201.625,
232172.688, 151080.312, 81092.375, 6118.523, 74973.852, 74973.852,
2781.438, 303084.188, 155628.625, 87204.867, 87204.867, 57069.953,
185763.547, 185763.547, 190207.062, 355710.625, 67807.781,
287902.844, 588.75, 109750.75, 177563.344, 87.219, 105280.492,
72195.633, 774.938, 71420.695, 36749.508, 164.355, 34506.832,
4792.115, 29714.717, 29714.717, 108.551, 34562.637, 34562.637,
32769.969, 144706.156, 144706.156, 64133.438, 223180.656,
36527.672, 82853.406, 52276.781, 51522.797, 51522.797, 4908.375,
98891.203, 98891.203, 511.5, 165499.156, 20642.332, 1783.279,
18859.053, 318.086, 18540.967, 1577.248, 16963.719, 16963.719,
354.016, 185787.469, 155731.156, 30056.312, 1013.598, 29042.715,
29042.715, 1931388.75, 2143003, 551796.875, 231989.312, 82568.562,
437467.5, 16525.25, 324515.812, 96426.453, 96426.453, 135519.469,
285422.781, 8552.406, 276870.375, 276870.375, 5.812, 520030.25,
794.375, 324362.406, 194873.469, 162.5, 194710.969, 4888.016,
114990.875, 74832.078, 74832.078, 6203.672, 183619.281, 1268.141,
136191.688, 42292.34, 3867.119, 0.019, 3867.101, 3867.101,
227.457, 45932.004, 45932.004, 3807.484, 178543.656, 178543.656,
308053.062, 211182.797, 39347.547, 4425.453, 167409.797,
120488.812, 46920.988, 46920.988, 2148.078, 169687.172, 169687.172,
72697.812, 543317.5, 9678.93, 120968.18, 5362.969, 5362.969,
41226.438, 85104.711, 2969.125, 82135.586, 82135.586, 123.203,
135886.875, 135886.875, 42379.688, 559291.875, 77656.008,
1751.617, 75904.391, 75904.391, 336533.938, 300413.938, 265584.281,
738.668, 34090.996, 30090.535, 0.032, 4000.43, 0, 4000.429,
0.001, 4000.428, 4000.428, 0.001, 0.016, 4000.444, 0.013,
4000.431, 4000.431, 0.009, 0.011, 4000.44, 4000.44, 0.009,
0.013, 4000.429, 0, 4000.429, 4000.429, 0.002, 4000.44, 0.011,
4000.429, 4000.429, 593.953, 34235.711, 34235.711, 362058.625,
793156.75, 148606.844, 148606.844, 84171.188, 513389.625,
218779.781, 125423.023, 125423.023, 181192.688, 163010.125,
72647.133, 4295.141, 86067.852, 481.289, 85586.562, 4966.859,
80619.703, 1014.047, 79605.656, 49919.188, 29686.471, 4382.527,
25303.943, 110.602, 20114.336, 1078.513, 0.056, 4000.437,
4000.437, 0.042, 4000.451, 0.007, 4000.444, 4000.444, 1078.463,
0.092, 4000.452, 0, 0.008, 4000.444, 0.011, 4000.433, 4000.433,
0.005, 0.014, 0.003, 4000.429, 0, 4000.429, 0, 4000.429,
4000.429, 0.003, 0.001, 4000.429, 0, 4000.428, 4000.428,
0, 0.001, 4000.428, 4000.428, 0, 4000.429, 4000.429, 0.011,
4000.435, 0.003, 0.001, 4000.431, 4000.431, 0, 4000.431,
0.002, 4000.429, 0.001, 4000.428, 4000.428, 0.029, 0.075,
0.011, 4000.429, 133.322, 3867.107, 3867.107, 0.005, 4000.435,
4000.435, 0.074, 4000.44, 0.001, 0.012, 4000.428, 133.329,
3867.099, 3867.099, 0.011, 4000.428, 4000.428, 1811.711,
23381.631, 2828.205, 20553.426, 1373.762, 19179.664, 19179.664,
7.859, 90355.133, 90355.133, 185424.625, 199622, 404281.562,
68264.25, 997.203, 63266.555, 0.046, 4000.445, 4000.445,
0.03, 0.026, 4000.435, 4000.435, 0.003, 4000.458, 0.02, 4000.438,
0.002, 4000.436, 0.007, 4000.428, 4000.428, 133.836, 67133.211,
6825.562, 60307.648, 60307.648, 2661.344, 138934.156, 330950.312,
54076.906, 276873.406, 276873.406, 98121.75, 340731.281,
31031.426, 31031.426, 3289.938, 368472.781, 368472.781, 83261.5,
588906.312, 588906.312, 796594.75, 2650230.5, 599376.875,
649757.625, 1401096, 1120280.625, 245609.281, 35206.121,
82.555, 35123.566, 35123.566, 151180.047, 129635.359, 125634.867,
0.062, 4000.433, 4000.433, 0.005, 0.051, 0.01, 4000.429,
0.001, 4000.428, 4000.428, 0.008, 4000.431, 0.002, 4000.429,
4000.429, 0.023, 0.019, 133.359, 3867.089, 3867.089, 0.019,
4000.429, 4000.429, 0.018, 4000.449, 0.015, 4000.434, 0.004,
4000.43, 4000.43, 114857.75, 1226157.625, 709838.25, 43469.938,
438452.344, 227915.969, 591.531, 227324.438, 227324.438,
209530.625, 456837.688, 65579.406, 69060.469, 322197.812,
64276.812, 257921, 257921, 3620.438, 387637.844, 387637.844,
171191.375, 1746967.625, 17836.908, 17836.908, 1004130.188,
760674.312, 22358.438, 738315.875, 54804.062, 395246.312,
256798.156, 31467.338, 2757.723, 28709.615, 28709.615, 67982.875,
220282.625, 28852.906, 191429.719, 191429.719, 313455.344,
326116.156, 43940.32, 43940.32, 12.094, 370044.375, 140323.656,
229720.719, 16931.047, 212789.672, 171659.656, 41130.02,
41130.02)), .Names = c("edge", "Nnode", "tip.label", "edge.length"
), class = "phylo", order = "cladewise"), structure(list(edge = structure(c(271L,
272L, 273L, 274L, 274L, 275L, 275L, 273L, 276L, 276L, 277L, 277L,
272L, 278L, 278L, 279L, 279L, 280L, 281L, 282L, 282L, 281L, 283L,
284L, 285L, 285L, 284L, 286L, 286L, 287L, 288L, 288L, 287L, 289L,
289L, 290L, 290L, 283L, 291L, 292L, 292L, 291L, 293L, 293L, 280L,
294L, 295L, 296L, 296L, 295L, 297L, 297L, 298L, 298L, 299L, 299L,
294L, 300L, 300L, 301L, 302L, 302L, 303L, 303L, 304L, 304L, 305L,
306L, 306L, 307L, 307L, 308L, 308L, 305L, 309L, 310L, 310L, 311L,
311L, 309L, 312L, 312L, 313L, 313L, 314L, 314L, 301L, 315L, 316L,
316L, 315L, 317L, 317L, 318L, 318L, 271L, 319L, 320L, 321L, 322L,
323L, 323L, 322L, 324L, 325L, 326L, 326L, 325L, 327L, 327L, 328L,
329L, 329L, 328L, 330L, 330L, 324L, 331L, 331L, 321L, 332L, 333L,
333L, 332L, 334L, 335L, 335L, 336L, 337L, 337L, 336L, 338L, 338L,
334L, 339L, 340L, 341L, 342L, 342L, 341L, 343L, 344L, 344L, 343L,
345L, 346L, 346L, 347L, 348L, 348L, 347L, 349L, 349L, 350L, 350L,
351L, 351L, 345L, 352L, 353L, 354L, 354L, 353L, 355L, 355L, 352L,
356L, 357L, 357L, 358L, 358L, 356L, 359L, 359L, 340L, 360L, 360L,
361L, 361L, 339L, 362L, 363L, 364L, 364L, 365L, 365L, 366L, 366L,
363L, 367L, 367L, 368L, 368L, 362L, 369L, 369L, 370L, 370L, 371L,
371L, 320L, 372L, 373L, 373L, 372L, 374L, 375L, 376L, 376L, 377L,
377L, 375L, 378L, 378L, 374L, 379L, 380L, 381L, 381L, 382L, 382L,
383L, 383L, 380L, 384L, 384L, 379L, 385L, 386L, 387L, 388L, 389L,
390L, 390L, 389L, 391L, 392L, 392L, 391L, 393L, 393L, 394L, 394L,
395L, 395L, 388L, 396L, 396L, 397L, 397L, 387L, 398L, 399L, 399L,
398L, 400L, 401L, 401L, 402L, 402L, 400L, 403L, 403L, 404L, 404L,
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232181.25, 866986, 543661.875, 543661.875, 467544.125, 422993.156,
2495.969, 517614.625, 207402.25, 310212.375, 162518.656,
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47088.121, 11017.262, 36070.859, 431.82, 35639.039, 35639.039,
2278.875, 347015.062, 170816.641, 893.391, 169923.25, 169923.25,
152070.875, 365760.844, 283400.062, 82360.789, 7764.102,
74596.688, 74596.688, 68370.938, 874732.812, 704742.062,
169990.766, 40672.023, 129318.742, 129318.742, 735933.75,
2403213.5, 688425.25, 688425.25, 2087110.875, 425293.125,
579234.75, 579234.75, 205792.875, 407707.531, 391027.469,
242706.25, 148321.219, 148321.219, 399274, 366637.531, 32823.457,
3271.422, 29552.035, 29552.035, 348589.281, 50871.711, 50871.711,
7746282, 8724387, 281659.25, 164115.312, 117543.93, 3850.562,
113693.367, 113693.367, 3598266.5, 5407779.5, 609473.5, 2593043.25,
1199054, 1006208.688, 496768.188, 376413.625, 133026.875,
50058.359, 82968.516, 30623.391, 52345.125, 1505.234, 50839.891,
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4000.432, 0.001, 4000.431, 4000.431, 0.002, 4000.434, 0.005,
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50852.328, 50852.328, 697.594, 506141.469, 352263.062, 96464.062,
57414.34, 40142.57, 17271.77, 17271.77, 32394.5, 121483.906,
103878.367, 17605.537, 2446.914, 15158.623, 11158.143, 4000.48,
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4000.433, 0.003, 4000.429, 0.001, 4000.428, 4000.428, 0.004,
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35237.594, 274977.219, 4000.438, 4000.438, 197769.844, 81207.82,
1063.828, 80143.992, 80143.992, 385837.656, 238884.406, 125196.617,
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218117.906, 3120.375, 214997.531, 214997.531, 9051.375, 170065,
314284.562, 545947.625, 99711.07, 558.555, 99152.516, 99152.516,
519752.688, 125906.016, 204.734, 125701.281, 68948.484, 56752.797,
56752.797, 137098, 822845.25, 822845.25, 123947.125, 616753.688,
389307.438, 389307.438, 350609.062, 655452.062, 655452.062,
90986, 2374733, 572334.75, 1549501.875, 252896.344, 252896.344,
782386.438, 1020011.812, 440822.625, 97350.969, 146093.969,
260794.25, 74949.992, 4336.805, 70613.188, 41162.203, 29450.984,
29450.984, 18212.719, 281472.938, 36058.594, 36058.594, 914.062,
249816.75, 1219.516, 65581.195, 21517.488, 44063.707, 108.23,
43955.477, 2304.457, 41651.02, 41651.02, 498.68, 66302.031,
1374.094, 64927.938, 64927.938, 68728.828, 247888.641, 247888.641,
55992.688, 195844.875, 195755.766, 34244.895, 6736.184, 27508.711,
27508.711, 596.219, 229404.438, 18000.703, 211403.734, 178921.422,
32482.307, 32482.307, 88307.594, 333537.469, 4000.46, 0.011,
4000.449, 0.012, 4000.438, 0.01, 4000.428, 4000.428, 42.781,
139400.047, 198095.109, 21950.828, 56177.68, 3436.75, 39670.398,
76859.453, 61663.348, 15196.104, 15196.104, 737.719, 115792.133,
4551.086, 111241.047, 813.203, 110427.844, 65016.965, 45410.879,
45410.879, 900.086, 119066.516, 119066.516, 24606.625, 151537.656,
151537.656, 36002.188, 301492.969, 301492.969, 78908.406,
500280.781, 141039.656, 359241.125, 21370.219, 337870.906,
236514.812, 101356.086, 101356.086, 723251.5, 3169804, 425828.875,
425828.875, 2150486.25, 1445146.75, 755773.625, 689373.125,
522942.5, 166430.625, 27437.781, 138992.844, 204.672, 138788.172,
1075.422, 137712.75, 1635.469, 136077.281, 9.156, 136068.125,
172.797, 135895.328, 1214.344, 134680.984, 450.547, 134230.438,
57209.602, 77020.836, 46616.703, 30404.131, 4161.447, 26242.684,
26242.684)), .Names = c("edge", "Nnode", "tip.label", "edge.length"
), class = "phylo", order = "cladewise") )
expect_equal( trees, expected )
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