dist_blosum_unit: Helper function for parallel computing.
In phac-nml-phrsd/angedist: Antigenic Genetic Distance
dist_blosum_unit R Documentation
Helper function for parallel computing.
Description
Helper function for parallel computing.
Usage
dist_blosum_unit(i, seqs, sites, logistic.scale = 15)
Arguments
i
Integer. Iteration number.
seqs
List of sequences.
sites
List of integer vectors. Positions where the differences are calculated.
For example, sites = list( c(1:5), c(300:900), 1234.
Default logistic.scale = 15.
logistic.scale
Numeric. Scale parameter for the
logistic function when converting similarity into a distance.
Value
Numeric. BLOSUM distance.
phac-nml-phrsd/angedist documentation built on Nov. 27, 2022, 7:23 p.m.
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| dist_blosum_unit | R Documentation |
Helper function for parallel computing.
Description
Helper function for parallel computing.
Usage
dist_blosum_unit(i, seqs, sites, logistic.scale = 15)
Arguments
i |
Integer. Iteration number. |
seqs |
List of sequences. |
sites |
List of integer vectors. Positions where the differences are calculated.
For example, |
logistic.scale |
Numeric. Scale parameter for the logistic function when converting similarity into a distance. |
Value
Numeric. BLOSUM distance.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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