filter_subseq: Filter sequences that have defined starting proteins.

View source: R/clean_seq.R

filter_subseqR Documentation

Filter sequences that have defined starting proteins.

Description

Filter sequences that have defined starting proteins.

Usage

filter_subseq(x, subseq, position, verbose = FALSE)

Arguments

x

List of sequences.

subseq

String. Sequence of characters that must start the sequence. For example subseq='MK' (not c('M','K')).

position

String. Position of the subsequence: "start" or "end".

verbose

Logical. Display additional information about the filtering process.

Value

A list of sequences that all comply with the tolerance for missing/aberrant sata.


phac-nml-phrsd/angedist documentation built on Nov. 27, 2022, 7:23 p.m.