API for phac-nml/pavian
Visualize and analyze metagenomics classification results
| Global functions | |
|---|---|
| REPORTATTR | Source code |
| alignmentModule | Man page Source code |
| alignmentModuleUI | Man page Source code |
| assayData | Source code |
| assayData.merged_reports | Source code |
| beautify_colnames | Man page |
| beautify_string | Source code |
| beautify_taxLineage | Source code |
| build_kraken_tree | Source code |
| build_sankey_network | Source code |
| calc_robust_zscore | Source code |
| collapse.taxRanks | Source code |
| common_buttons | Source code |
| comparisonModule | Man page Source code |
| comparisonModuleUI | Man page Source code |
| comparisonModuleUI_function | Source code |
| dashboardUI | Man page Source code |
| dataInputModule | Man page Source code |
| dataInputModuleUI | Man page Source code |
| delete_taxRanks_below | Source code |
| dropdown_options | Source code |
| exampleDataPanel | Source code |
| extract_from_report | Source code |
| figure_options | Source code |
| filter_cladeReads | Man page |
| filter_reports_to_taxRank | Source code |
| filter_taxa | Man page |
| filter_taxon | Man page Source code |
| formatSummaryDT | Source code |
| get_bam2 | Source code |
| get_col | Source code |
| get_combinations | Source code |
| get_nreads | Man page Source code |
| get_pileup | Man page Source code |
| get_sample_name | Source code |
| get_seqlengths | Man page Source code |
| humanreadable | Man page Source code |
| info_message | Source code |
| list_kraken_files | Source code |
| load_or_create | Man page Source code |
| log_data_cols | Source code |
| merge_reports | Man page Source code |
| merge_reports2 | Man page Source code |
| my_gg_theme | Source code |
| na0 | Source code |
| navbarpageUI | Source code |
| normalize | Man page |
| normalize_data_cols | Source code |
| pavianApp | Man page Source code |
| pavianServer | Man page Source code |
| plot_pileup | Man page Source code |
| rbind_w_common_columns | Source code |
| read_report | Man page Source code |
| read_report2 | Man page Source code |
| read_reports | Man page Source code |
| read_sample_data | Man page Source code |
| read_server_directory1 | Man page Source code |
| reportOverviewModule | Man page Source code |
| reportOverviewModuleUI | Man page Source code |
| reportOverviewModuleUI_function | Source code |
| req_attr | Source code |
| robust_zscore | Man page Source code |
| runApp | Man page Source code |
| sampleModule | Man page Source code |
| sampleModuleUI | Man page Source code |
| sampleModuleUI_function | Source code |
| selectDataPanel | Source code |
| serverDataPanel | Source code |
| startsWith | Source code |
| summarize_report | Man page Source code |
| summarize_reports | Man page Source code |
| uploadFilePanel | Source code |
| withProgress_ns | Source code |
| zero_if_na | Man page |
| zero_if_na1 | Source code |
