read_report2: Read kraken or centrifuge-style report
In phac-nml/pavian: Visualize and analyze metagenomics classification results

Read kraken or centrifuge-style report

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read_report2(myfile, collapse = TRUE, keep_taxRanks = c("D", "K", "P",
  "C", "O", "F", "G", "S"), min.depth = 0, filter_taxon = NULL,
  has_header = NULL, add_taxRank_columns = FALSE)

`myfile`	kraken report file
`collapse`	should the results be collapsed to only those taxRanks specified in keep_taxRanks?
`keep_taxRanks`	taxRanks to keep when collapse is TRUE
`min.depth`	minimum depth
`filter_taxon`	filter certain taxon names
`has_header`	if the kraken report has a header or not
`add_taxRank_columns`	if TRUE, for each taxRank columns are added