get_nreads: Get number of aligned reads from a bam file
In phac-nml/pavian: Visualize and analyze metagenomics classification results
Description
Usage
Arguments
Value
View source: R/alignment-get_pileup.R
Description
Get number of aligned reads from a bam file
Usage
1
get_nreads(bam_file, min_mapq = 0)
Arguments
bam_file
character(1) or BamFile; BAM file path.
min_mapq
Minimum mapping quality
Value
Number of reads for each sequence.
phac-nml/pavian documentation built on Aug. 20, 2019, 5:54 a.m.
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Description Usage Arguments Value
View source: R/alignment-get_pileup.R
Description
Get number of aligned reads from a bam file
Usage
1 | get_nreads(bam_file, min_mapq = 0)
|
Arguments
bam_file |
character(1) or BamFile; BAM file path. |
min_mapq |
Minimum mapping quality |
Value
Number of reads for each sequence.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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