README.md
In phac-nml/plasmidprofiler: Visualization of Plasmid Profile Results

Plasmid Profiler

Plasmid Profiler

Written by: Adrian Zetner, Public Health Agency of Canada, National Microbiology Laboratory

Funded by the National Micriobiology Laboratory

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at:

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

The Plasmid Profiler leverages BLAST and short read sequece typing to identify Enterobacteriaceae plasmids from NGS reads. The results are then parsed and presented in a heatmap format showing the likely plasmid families present and AMR genes discovered within the sequencing data.

P2 v 0.1

P2 requires R (>= 3.3.1)

Download R package and enter the following command