combine_results: Combines SRST2 and Blast results into a single dataframe
In phac-nml/plasmidprofiler: Visualization of Plasmid Profile Results
View source: R/parse_related.R
combine_results R Documentation
Combines SRST2 and Blast results into a single dataframe
Description
Combines blast and SRST2 results, cuts to desired columns (Sample,
Plasmid, Inc_group, Coverage, Divergence, Length, Clusterid), matches
plasmids to BR and appends simplified INC names, all future
modifications are done to this dataframe
Usage
combine_results(sr, br)
Arguments
sr
SRST2 results loaded from read_srst2
br
Blast results parsed by blast_parser
Value
Seven column dataframe of SRST2 results now including INC groups
Examples
## Not run:
combine_results(example_srst2_results, example_blast_results)
## End(Not run)
phac-nml/plasmidprofiler documentation built on June 11, 2022, 11:25 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/parse_related.R
| combine_results | R Documentation |
Combines SRST2 and Blast results into a single dataframe
Description
Combines blast and SRST2 results, cuts to desired columns (Sample, Plasmid, Inc_group, Coverage, Divergence, Length, Clusterid), matches plasmids to BR and appends simplified INC names, all future modifications are done to this dataframe
Usage
combine_results(sr, br)
Arguments
sr |
SRST2 results loaded from read_srst2 |
br |
Blast results parsed by blast_parser |
Value
Seven column dataframe of SRST2 results now including INC groups
Examples
## Not run: combine_results(example_srst2_results, example_blast_results) ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.