blast_parser: Blast Results Parser Function
In phac-nml/plasmidprofiler: Visualization of Plasmid Profile Results
View source: R/parse_related.R
blast_parser R Documentation
Blast Results Parser Function
Description
Loads the imported blast results, extracts desired columns, Create new column of ratio between hit
length to query length - higher as denominator, adjusts pID by this ratio. Any AMR results are removed from the returned df.
Usage
blast_parser(blast.results)
Arguments
blast.results
Blast results loaded from read_blast or Global Env
Value
Blast table with pID adjusted by ratio of hit length to query length (larger as denominator)
Examples
## Not run:
blast_parser(blastdata)
## End(Not run)
phac-nml/plasmidprofiler documentation built on June 11, 2022, 11:25 a.m.
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View source: R/parse_related.R
| blast_parser | R Documentation |
Blast Results Parser Function
Description
Loads the imported blast results, extracts desired columns, Create new column of ratio between hit length to query length - higher as denominator, adjusts pID by this ratio. Any AMR results are removed from the returned df.
Usage
blast_parser(blast.results)
Arguments
blast.results |
Blast results loaded from read_blast or Global Env |
Value
Blast table with pID adjusted by ratio of hit length to query length (larger as denominator)
Examples
## Not run: blast_parser(blastdata) ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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