get_all_calibrations: Get secondary calibrations from a chronogram database for a...

In phylotastic/datelife: Scientific Data on Time of Lineage Divergence for Your Taxa

Get secondary calibrations from a chronogram database for a set of given taxon names

Description

get_all_calibrations performs a datelife_search() and gets divergence times (i.e., secondary calibrations) from a chronogram database for each taxon name pair given as input.

get_all_calibrations performs a datelife_search() and gets divergence times (i.e., secondary calibrations) from a chronogram database for each taxon name pair given as input.

Usage

get_all_calibrations(input = NULL, each = FALSE)

get_all_calibrations(input = NULL, each = FALSE)

Arguments

input	One of the following: A character vector With taxon names as a single comma separated starting or concatenated with c(). A phylogenetic tree with taxon names as tip labels As a phylo or multiPhylo object, OR as a newick character string. A datelifeQuery object An output from make_datelife_query().
each	Boolean, default to FALSE: all calibrations are returned in the same data.frame. If TRUE, calibrations from each chronogram are returned in separate data frames.

Value

An object of class calibrations, which is a data.frame (if each = FALSE) or a list of data.frames (if each = TRUE) of node ages for each pair of taxon names. You can access the input data from which the calibrations were extracted with attributes(output)$chronograms.

phylotastic/datelife documentation built on Jan. 17, 2024, 11:10 p.m.