Files in phylotastic/datelife
Underlying Code for DateLife Web Service

.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
R/.Rapp.history
R/all_calibrations.R R/cacheauthors.R R/data.R R/datelife.R R/datelife_internal.R R/datelife_summary.R R/groves.R R/lonely_functions.R R/opentree_chronograms.R R/plots.R R/result.R R/tree_makeup_dates.R R/tree_processing.R R/uncertainty.R README.md
codecov.yml
data-raw/.DS_Store
data-raw/axisGeo2.R data-raw/axisGeo3.R data-raw/generate_opentree_chronograms.R
data-raw/opentree_chronograms-original.rda
data/.DS_Store
data/birds_and_cats.RData
data/contributor_cache.rda
data/dlsearch_subset2.RData
data/felid_gdr_phylo_all.RData
data/felid_sdm.RData
data/geostellar.RData
data/names_subset2.RData
data/opentree_chronograms.rda
data/plant_bold_otol_tree.RData
data/some_ants_datelife_result.RData
data/treebase_cache.rda
inst/.DS_Store
inst/extdata/geo_stellar_chrono_scale_2018.9.20.csv
inst/extdata/geo_stellar_chrono_scale_2018.9.20.xlsx
man/batch_tnrs_match_names.Rd man/birds_and_cats.Rd man/build_grove_list.Rd man/build_grove_matrix.Rd man/clean_ott_chronogram.Rd man/clean_tnrs.Rd man/contributor_cache.Rd man/datelife_authors_tabulate.Rd man/datelife_query_check.Rd man/datelife_query_length_check.Rd man/datelife_result_MRCA.Rd man/datelife_result_check.Rd man/datelife_result_median.Rd man/datelife_result_sdm.Rd man/datelife_result_study_index.Rd man/datelife_search.Rd man/dlsearch_subset2.Rd man/felid_gdr_phylo_all.Rd man/felid_sdm.Rd man/filter_for_grove.Rd man/geostellar.Rd man/get_all_calibrations.Rd man/get_biggest_phylo.Rd man/get_dated_otol_induced_subtree.Rd man/get_datelife_result.Rd man/get_mrbayes_node_constraints.Rd man/get_otol_chronograms.Rd man/get_otol_synthetic_tree.Rd man/get_subset_array_dispatch.Rd man/input_process.Rd man/is_good_chronogram.Rd man/is_n_overlap.Rd man/make_all_associations.Rd man/make_bladj_tree.Rd man/make_bold_otol_tree.Rd man/make_contributor_cache.Rd man/make_datelife_query.Rd man/make_mrbayes_runfile.Rd man/make_mrbayes_tree.Rd man/make_otol_associations.Rd man/make_overlap_table.Rd man/make_treebase_associations.Rd man/make_treebase_cache.Rd man/missing_taxa_check.Rd man/names_subset2.Rd man/opentree_chronograms.Rd man/patristic_matrix_MRCA.Rd man/patristic_matrix_list_to_array.Rd man/patristic_matrix_name_reorder.Rd man/patristic_matrix_pad.Rd man/patristic_matrix_taxa_all_matching.Rd man/patristic_matrix_to_newick.Rd man/patristic_matrix_to_phylo.Rd man/patristic_matrix_unpad.Rd man/phylo_check.Rd man/phylo_generate_uncertainty.Rd man/phylo_get_node_numbers.Rd man/phylo_has_brlen.Rd man/phylo_height_omi.Rd man/phylo_tiplabel_space_to_underscore.Rd man/phylo_tiplabel_underscore_to_space.Rd man/pick_grove.Rd man/plant_bold_otol_tree.Rd man/plot_densitree.Rd man/plot_phylo_all.Rd man/relevant_curators_tabulate.Rd man/results_list_process.Rd man/run.Rd man/run_mrbayes.Rd man/sample_trees.Rd man/save_otol_chronograms.Rd man/some_ants_datelife_result.Rd man/subset_trees.Rd man/summarize_datelife_result.Rd man/summary_patristic_matrix_array.Rd man/tree_add_dates.Rd man/tree_add_nodelabels.Rd man/tree_add_outgroup.Rd man/tree_check.Rd man/tree_fix_brlen.Rd man/tree_get_node_data.Rd man/tree_get_singleton_outgroup.Rd man/tree_node_tips.Rd man/treebase_cache.Rd man/update_all_cached.Rd man/update_datelife_cache.Rd man/use_all_calibrations.Rd man/wrap_string_to_plot.Rd tests/testthat.R tests/testthat/test_core.R tests/testthat/test_examples.R tests/testthat/test_groves.R tests/testthat/test_plots.R tests/testthat/test_taxa.R tests/testthat/test_taxa_batch.R tests/testthat/test_tree_processing.R
vignettes/.DS_Store
vignettes/datelife.Rmd
vignettes/datelife.html
vignettes/datelife_example.Rmd vignettes/mamms_phyloall/mamms_phyloall_1.pdf vignettes/mamms_phyloall/mamms_phyloall_2.pdf vignettes/mamms_phyloall/mamms_phyloall_3.pdf vignettes/mamms_phyloall/mamms_phyloall_4.pdf vignettes/mamms_phyloall/mamms_phyloall_5.pdf vignettes/mamms_phyloall/mamms_phyloall_6.pdf vignettes/mamms_phyloall/mamms_phyloall_7.pdf
phylotastic/datelife documentation built on Dec. 1, 2018, 11:16 p.m.