patristic_matrix_array_phylo_congruify: Congruify a patristic matrix array from a given 'phylo'...

In phylotastic/datelife: Scientific Data on Time of Lineage Divergence for Your Taxa

Congruify a patristic matrix array from a given phylo object.

Description

Congruify a patristic matrix array from a given phylo object.

Usage

patristic_matrix_array_phylo_congruify(
  patristic_matrix,
  target_tree,
  dating_method = "PATHd8",
  attempt_fix = TRUE
)

Arguments

patristic_matrix	A patristic matrix, rownames and colnames must be taxa.
target_tree	A phylo object. Use this in case you want a specific backbone for the output tree.
dating_method	The method used for tree dating.
attempt_fix	Default to TRUE. If congruification results in NA branch lengths, it will attempt to fix them.

Value

A matrix.

phylotastic/datelife documentation built on April 29, 2024, 11:54 p.m.