patristic_matrix_array_congruify: 'patristic_matrix_array_congruify' is used for...

In phylotastic/datelife: Scientific Data on Time of Lineage Divergence for Your Taxa

patristic_matrix_array_congruify is used for patristic_matrix_array_subset_both and patristic_matrix_array_congruify.

Description

patristic_matrix_array_congruify is used for patristic_matrix_array_subset_both and patristic_matrix_array_congruify.

Usage

patristic_matrix_array_congruify(
  patristic_matrix_array,
  taxa,
  phy = NULL,
  dating_method = "PATHd8"
)

Arguments

patristic_matrix_array	A patristic matrix array, rownames and colnames must be taxa.
taxa	Vector of taxon names to get a subset for.
phy	A user tree to congruify as phylo object (ape).
dating_method	The method used for tree dating.

Value

A patristic matrix with ages for the target taxa.

phylotastic/datelife documentation built on June 9, 2024, 6:50 p.m.