run: Core function to generate results

Description Usage Arguments Value

View source: R/result.R

Description

Core function to generate results

Usage

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run(input = c("Rhea americana", "Pterocnemia pennata",
  "Struthio camelus"), format = "citations", partial = "yes",
  plot.width = 600, plot.height = 600, use_tnrs = "no",
  approximate_match = "yes", opentree_chronograms = NULL)

Arguments

input

A newick string or vector of taxa

format

The output format

partial

How to deal with trees that have a subset of taxa in the query

plot.width

Width in pixels for output plot

plot.height

Height in pixels for output plot

use_tnrs

Whether to use OpenTree's TNRS for the input

approximate_match

If using TNRS, use approximate matching

opentree_chronograms

The list of lists containing the input trees and other info

Value

results in the desired format


phylotastic/datelife documentation built on Jan. 14, 2019, 9:56 p.m.