phylo_subset_both: Subset a reference and a target tree given as 'phylo'...
In phylotastic/datelife: Scientific Data on Time of Lineage Divergence for Your Taxa
View source: R/datelife_internal.R
phylo_subset_both R Documentation
Subset a reference and a target tree given as phylo objects.
Description
Subset a reference and a target tree given as phylo objects.
Usage
phylo_subset_both(
reference_tree,
taxa,
phy = NULL,
phy4 = NULL,
dating_method = "PATHd8"
)
Arguments
reference_tree
A phylo object.
taxa
Vector of taxon names to get a subset for.
phy
A user tree to congruify as phylo object (ape).
phy4
A user tree to congruify in phylo4 format (phylobase).
dating_method
The method used for tree dating.
Value
A list with a patristic matrix array and a $problem if any.
phylotastic/datelife documentation built on April 29, 2024, 11:54 p.m.
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View source: R/datelife_internal.R
| phylo_subset_both | R Documentation |
Subset a reference and a target tree given as phylo objects.
Description
Subset a reference and a target tree given as phylo objects.
Usage
phylo_subset_both(
reference_tree,
taxa,
phy = NULL,
phy4 = NULL,
dating_method = "PATHd8"
)
Arguments
reference_tree |
A |
taxa |
Vector of taxon names to get a subset for. |
phy |
A user tree to congruify as |
phy4 |
A user tree to congruify in |
dating_method |
The method used for tree dating. |
Value
A list with a patristic matrix array and a $problem if any.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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