make_sdm: Make a Super Distance Matrix (SDM) from a list of good...
In phylotastic/datelife: Scientific Data on Time of Lineage Divergence for Your Taxa
make_sdm R Documentation
Make a Super Distance Matrix (SDM) from a list of good matrices obtained with get_goodmatrices()
Description
Make a Super Distance Matrix (SDM) from a list of good matrices obtained with get_goodmatrices()
Usage
make_sdm(unpadded.matrices, weighting = "flat")
Arguments
unpadded.matrices
A list of patristic matrices, a datelifeResult object.
weighting
A character vector indicating how much weight to give to each
tree in input during the SDM analysis. Options are:
- weighting = "flat"
All trees have equal weighting.
- weighting = "taxa"
Weight is proportional to number of taxa.
- weighting = "inverse"
Weight is proportional to 1 / number of taxa.
Defaults to weighting = "flat".
Value
A matrix.
phylotastic/datelife documentation built on June 9, 2024, 6:50 p.m.
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| make_sdm | R Documentation |
Make a Super Distance Matrix (SDM) from a list of good matrices obtained with get_goodmatrices()
Description
Make a Super Distance Matrix (SDM) from a list of good matrices obtained with get_goodmatrices()
Usage
make_sdm(unpadded.matrices, weighting = "flat")
Arguments
unpadded.matrices |
A list of patristic matrices, a |
weighting |
A character vector indicating how much weight to give to each
tree in
Defaults to |
Value
A matrix.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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