make_bladj_tree: Use the BLADJ algorithm to get a chronogram from a tree...
In phylotastic/datelife: Scientific Data on Time of Lineage Divergence for Your Taxa
View source: R/make_bladj_tree.R
make_bladj_tree R Documentation
Use the BLADJ algorithm to get a chronogram from a tree topology for which you have age data for some of its nodes.
Description
The function takes a tree topology and uses the BLADJ algorithm
implemented with phylocomr::ph_bladj() to assign node ages and branch lengths, given a
set of fixed node ages and respective node names.
Usage
make_bladj_tree(tree = NULL, nodenames = NULL, nodeages = NULL)
Arguments
tree
A tree either as a newick character string or as a phylo object.
nodenames
A character vector with names of nodes in tree with known ages
nodeages
A numeric vector with the actual ages of named nodes
Details
Input tree can be dated or not, $edge.length is ignored.
Ages given in nodeages are fixed on their corresponding nodes given in nodenames.
Value
A phylo object.
phylotastic/datelife documentation built on June 9, 2024, 6:50 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/make_bladj_tree.R
| make_bladj_tree | R Documentation |
Use the BLADJ algorithm to get a chronogram from a tree topology for which you have age data for some of its nodes.
Description
The function takes a tree topology and uses the BLADJ algorithm
implemented with phylocomr::ph_bladj() to assign node ages and branch lengths, given a
set of fixed node ages and respective node names.
Usage
make_bladj_tree(tree = NULL, nodenames = NULL, nodeages = NULL)
Arguments
tree |
A tree either as a newick character string or as a |
nodenames |
A character vector with names of nodes in tree with known ages |
nodeages |
A numeric vector with the actual ages of named nodes |
Details
Input tree can be dated or not, $edge.length is ignored.
Ages given in nodeages are fixed on their corresponding nodes given in nodenames.
Value
A phylo object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.