Files in pierrejacob/winference

Approximate Bayesian Computation with the Wasserstein distance

.Rbuildignore

.Rprofile

.gitignore

DESCRIPTION

NAMESPACE

R/RcppExports.R R/create_lagmatrix.R R/fast_dmvnorm.R R/fast_rmvnorm.R R/gandkinversecdf.R R/get_my_colors.R R/hilbert_order.R R/levydriventransition.R R/metrics.R R/metropolishastings.R R/mmd.R R/model_get_autoregressive.R R/model_get_cosine.R R/model_get_gandk.R R/model_get_levydriven.R R/model_get_mgandk.R R/model_get_multivariatenormal.R R/model_get_normal.R R/model_get_pz_4param.R R/model_get_queue.R R/model_get_ricker.R R/model_get_toggleswitch.R R/particle_filter.R R/particlemetropolishastings.R R/plot_functions.R R/proposals.R R/pz_transition.R R/setmytheme.R R/systematic_resampling.R R/wasserstein.R R/wcovariance.R R/winference-package.R R/wmean.R R/wsmc.R R/wsmc_to_dataframe.R README.md

WInference.Rproj

inst/reproduceabc/README.R

inst/reproduceabc/ar1/.Rapp.history

inst/reproduceabc/ar1/README.R inst/reproduceabc/ar1/ar1_generate_data.R inst/reproduceabc/ar1/ar1_plots.R inst/reproduceabc/ar1/ar1_wsmc_delay1.R inst/reproduceabc/ar1/ar1_wsmc_marginal.R inst/reproduceabc/cosine/README.R inst/reproduceabc/cosine/cosine_generate_data.R inst/reproduceabc/cosine/cosine_mcmc.R inst/reproduceabc/cosine/cosine_plots.R inst/reproduceabc/cosine/cosine_wsmc_curvematching_wasserstein.R inst/reproduceabc/cosine/cosine_wsmc_euclidean.R inst/reproduceabc/gandk/README.R inst/reproduceabc/gandk/gandk_abctools.R inst/reproduceabc/gandk/gandk_generate_data.R inst/reproduceabc/gandk/gandk_mcmc.R inst/reproduceabc/gandk/gandk_plots_compare.R inst/reproduceabc/gandk/gandk_plots_convergence.R inst/reproduceabc/gandk/gandk_plots_ncomputed.R inst/reproduceabc/gandk/gandk_plots_threshold.R inst/reproduceabc/gandk/gandk_plots_w_to_posterior.R inst/reproduceabc/gandk/gandk_wsmc.R inst/reproduceabc/levydriven/README.R inst/reproduceabc/levydriven/levydriven_generate_data.R inst/reproduceabc/levydriven/levydriven_is_correction.R inst/reproduceabc/levydriven/levydriven_mh.R inst/reproduceabc/levydriven/levydriven_plots.R inst/reproduceabc/levydriven/levydriven_timings.R inst/reproduceabc/levydriven/levydriven_wsmc_hilbert.R inst/reproduceabc/levydriven/levydriven_wsmc_with_summary.R inst/reproduceabc/mgandk/README.R inst/reproduceabc/mgandk/mgandk_generate_data.R inst/reproduceabc/mgandk/mgandk_mcmc.R inst/reproduceabc/mgandk/mgandk_plots.R inst/reproduceabc/mgandk/mgandk_plots_ncomputed.R inst/reproduceabc/mgandk/mgandk_plots_threshold.R inst/reproduceabc/mgandk/mgandk_plots_wdist_to_posterior.R inst/reproduceabc/mgandk/mgandk_timings.R inst/reproduceabc/mgandk/mgandk_wsmc_hilbert.R inst/reproduceabc/mgandk/mgandk_wsmc_mmd.R inst/reproduceabc/mgandk/mgandk_wsmc_swap.R inst/reproduceabc/mgandk/mgandk_wsmc_wasserstein.R inst/reproduceabc/mvnormal/README.R inst/reproduceabc/mvnormal/mvnormal_generate_data.R inst/reproduceabc/mvnormal/mvnormal_plots.R inst/reproduceabc/mvnormal/mvnormal_rejection_summary.R inst/reproduceabc/mvnormal/mvnormal_rejection_wasserstein.R inst/reproduceabc/mvnormal/mvnormal_timings.R inst/reproduceabc/mvnormal/mvnormal_wsmc_euclidean.R inst/reproduceabc/mvnormal/mvnormal_wsmc_summary.R inst/reproduceabc/mvnormal/mvnormal_wsmc_wasserstein.R

inst/reproduceabc/queue/50.intermediateobs.neal.Rdata

inst/reproduceabc/queue/README.R inst/reproduceabc/queue/queue_abctools.R inst/reproduceabc/queue/queue_plots_compare.R inst/reproduceabc/queue/queue_pmmh_intermediate.R inst/reproduceabc/queue/queue_wsmc_marginal_intermediate.R inst/reproduceabc/supplementary/README.R inst/reproduceabc/supplementary/check_assumption_plot.R inst/reproduceabc/supplementary/gandk.checkassumption.R inst/reproduceabc/supplementary/multivariate.transportdistancecomparison.R inst/reproduceabc/supplementary/multivariate.transportdistancecomparison.plots.R inst/reproduceabc/supplementary/wasserstein_clt_mvtnorm_mean.R inst/reproduceabc/supplementary/wasserstein_clt_mvtnorm_mean_plots.R inst/reproduceabc/toggleswitch/README.R inst/reproduceabc/toggleswitch/toggle_switch_generate.R inst/reproduceabc/toggleswitch/toggle_switch_load_summary.R inst/reproduceabc/toggleswitch/toggle_switch_plots.R inst/reproduceabc/toggleswitch/toggle_switch_summary.R inst/reproduceabc/toggleswitch/toggle_switch_summary_smc.R inst/reproduceabc/toggleswitch/toggle_switch_wsmc.R inst/reproducepointestimation/README.R inst/reproducepointestimation/cauchydata_normalfit_fixedmk_diffn.R inst/reproducepointestimation/cauchydata_normalfit_fixedmk_diffn_KL.R inst/reproducepointestimation/gamma_normal_bootstrap.R inst/reproducepointestimation/gamma_normal_fixedmk_diffn.R inst/reproducepointestimation/gamma_normal_fixedn_diffmk.R inst/reproducepointestimation/gamma_normal_functions.R inst/reproducepointestimation/gandk.cluster.script.R inst/reproducepointestimation/gandk_correlated.R inst/reproducepointestimation/gandk_coverage.R inst/reproducepointestimation/gandk_functions.R inst/reproducepointestimation/gandk_plots.R inst/reproducepointestimation/lognormal.cluster.script.R inst/reproducepointestimation/lognormal_correlated.R inst/reproducepointestimation/lognormal_coverage.R inst/reproducepointestimation/lognormal_functions.R inst/reproducepointestimation/lognormal_plots.R inst/tutorials/tutorial_cosine.Rmd inst/tutorials/tutorial_cosine.pdf inst/tutorials/tutorial_distances.Rmd inst/tutorials/tutorial_distances.pdf inst/tutorials/tutorial_gandk.Rmd inst/tutorials/tutorial_gandk.pdf inst/tutorials/tutorial_normal.Rmd inst/tutorials/tutorial_normal.pdf

man/.Rapp.history

man/cost_matrix_L1.Rd man/cost_matrix_L2.Rd man/cost_matrix_Lp.Rd man/create_lagmatrix.Rd man/fast_dmvnorm.Rd man/fast_rmvnorm.Rd man/get_autoregressive.Rd man/get_cosine.Rd man/get_gandk.Rd man/get_levydriven.Rd man/get_mgandk.Rd man/get_multivariate_normal.Rd man/get_normal.Rd man/get_pz_4param.Rd man/get_ricker.Rd man/get_toggleswitch.Rd man/hilbert_order.Rd man/pz_transition.Rd man/setmytheme.Rd man/systematic_resampling.Rd man/wasserstein.Rd man/wcovariance.Rd man/winference-package.Rd man/wmean.Rd

src/HilbertCode.cpp

src/HilbertCode.h

src/Makevars

src/RcppExports.cpp

src/compute_cost.cpp

src/gandkinversecdf.cpp

src/hilbert_order.cpp

src/levydriven_.cpp

src/median.cpp

src/median.h

src/mmd.cpp

src/mvnorm.cpp

src/mvnorm.h

src/pz_functions.cpp

src/resampling.cpp

src/resampling.h

src/swapsweep.cpp

src/systematic.cpp

src/toggle_switch.cpp

src/variouswasserstein.cpp

src/wasserstein.cpp

src/wasserstein_auto.cpp

src/wasserstein_semi_discrete.cpp

src/weighted_averages.cpp

src/weighted_averages.h

winference.Rproj

pierrejacob/winference documentation built on Feb. 17, 2020, 10:28 p.m.