Files in pjnewcombe/R2BGLiMS
R interface to the java package BGLiMS (Bayesian Generalised Linear Model Selection).
.Rbuildignore
.gitignore
DESCRIPTION
Examples/AutocorrelationPlot_Examples.R
Examples/JAMMR_Examples.R
Examples/JAMMR_Examples_OLD.R
Examples/JAMPRED_Examples.R
Examples/JAM_Examples.R
Examples/ManhattanPlot_Examples.R
Examples/OLD_R2BGLiMS_Examples.R
Examples/PrettyResultsTable_Examples.R
Examples/R2BGLiMS_Examples.R
Examples/TopModels_Examples.R
Examples/TracePlots_Examples.R
LICENSE
NAMESPACE
R/AutocorrelationPlot.R
R/BetaBinomialParameters.R
R/ClassMethods.R
R/Classes.R
R/CredibleSet.R
R/HiddenFunctions.R
R/Hidden_WriteData.R
R/JAM.R
R/JAMMR.R
R/JAMMR_ManhattanPlot.R
R/JAMMR_SensitivityPlot.R
R/JAMPred.R
R/JAMPred_ParallelBlockIndices.R
R/JAMPred_SplitIntoPositiveDefiniteBlocks.R
R/JAM_LogisticToLinearEffects.R
R/JAM_PointEstimates.R
R/JAM_PosteriorSampler.R
R/JAM_RankCheck.R
R/ManhattanPlot.R
R/ModelSizeBayesFactors.R
R/NormInvGamPosteriorSample.R
R/PrettyResultsTable.R
R/R2BGLiMS-package.R
R/R2BGLiMS.R
R/StrongestPairwiseCorrelation.R
R/TopModels.R
R/TracePlots.R
R2BGLiMS.Rproj
README.md
REFRESH_R2BGLiMS.R
WRITE_ARGUMENTS.R
data/CaseCohortExample.rda
data/DefaultArguments.rda
data/JAMMR_Example.rda
data/JAMPred_Example.rda
data/JAM_Example.rda
data/LinearModelExample.rda
data/VAResults.rda
data/biopsyResults.rda
inst/BGLiMS/Arguments_Package.txt
inst/BGLiMS/BGLiMS.jar
inst/BGLiMS/README.TXT
inst/BGLiMS/lib/Jama-1.0.2.jar
inst/BGLiMS/lib/MyClassLibrary.jar
inst/BGLiMS/lib/colt.jar
inst/BGLiMS/lib/commons-math3-3.6.1.jar
inst/BGLiMS/lib/concurrent.jar
inst/BGLiMS/lib/optimization-1.3.jar
inst/BGLiMS/lib/ssj-3.3.1.jar
man/.Rapp.history
man/AutocorrelationPlot.Rd
man/CredibleSet.Rd
man/GetBetaBinomMuSd.Rd
man/GetBetaBinomParams.Rd
man/JAM.Rd
man/JAMMR.Rd
man/JAMMR_ManhattanPlot.Rd
man/JAMMR_SensitivityPlot.Rd
man/JAMPred.Rd
man/JAMPred_ParallelBlockIndices.Rd
man/JAMPred_SplitIntoPositiveDefiniteBlocks.Rd
man/JAM_LogisticToLinearEffects.Rd
man/JAM_PointEstimates.Rd
man/JAM_RankCheck.Rd
man/ManhattanPlot.Rd
man/ModelSizeBayesFactors.Rd
man/NormInvGamPosteriorSample.Rd
man/PrettyResultsTable.Rd
man/R2BGLiMS-package.Rd
man/R2BGLiMS.Rd
man/R2BGLiMS_Results-class.Rd
man/R2BGLiMS_Results-methods.Rd
man/StrongestPairwiseCorrelation.Rd
man/TopModels.Rd
man/TracePlots.Rd
man/dot-ApproxPostProbsByModelEnumeration.Rd
man/dot-BayesFactor.Rd
man/dot-BetaBinomialProbabilitySpecificModel.Rd
man/dot-ConfounderAdjustedResiduals.Rd
man/dot-ModelSpaceProbs.Rd
man/dot-ModelSpaceSpecProb.Rd
man/dot-ReadData.Rd
man/dot-ReweightSnpEffectsAccordingToBlockCorrelations.Rd
man/dot-WriteData.Rd
