API for pkimes/upbm
Tools for the analysis of universal protein binding microarrays
| Global functions | |
|---|---|
| .PBMDesign | Man page |
| .PBMDesign.PBMExperiment | Source code |
| .PBMDesign.table | Source code |
| .PBMExperiment | Man page |
| .invcalc | Source code |
| .pbmCheckStratify | Source code |
| .pbmExpandStratify | Source code |
| .show.PBMDesign | Source code |
| .show.PBMExperiment | Source code |
| .tidycol2mat | Source code |
| .wrapSA | Source code |
| PBMDesign | Man page |
| PBMDesign,DataFrame-method | Man page |
| PBMDesign,PBMExperiment-method | Man page |
| PBMDesign,data.frame-method | Man page |
| PBMDesign-class | Man page |
| PBMDesign-replace | Man page |
| PBMDesign<- | Man page |
| PBMDesign<-,PBMExperiment,PBMDesign-method | Man page |
| PBMExperiment | Man page Source code |
| PBMExperiment-class | Man page |
| PBMclass-accessors | Man page |
| `probeFilter<-` | Source code |
| `probeTrim<-` | Source code |
| backgroundSubtract | Man page Source code |
| blockmedian | Source code |
| cy3FitEmpirical | Man page Source code |
| cy3FitModel | Man page Source code |
| cy3GenerateRef | Man page Source code |
| cy3Normalize | Man page Source code |
| design,PBMDesign-method | Man page |
| design<-,PBMDesign,data.frame-method | Man page |
| dl2_estimator | Man page Source code |
| dl_estimator | Man page Source code |
| fitProbeDistribution | Man page Source code |
| gpr2PBMExperiment | Man page Source code |
| kmerFit | Man page Source code |
| kmerTestAffinity | Man page Source code |
| kmerTestContrast | Man page Source code |
| kmerTestSpecificity | Man page Source code |
| mapKmers | Man page Source code |
| normalizeAcrossReplicates | Man page Source code |
| normalizeWithinReplicates | Man page Source code |
| pbmFilterProbes | Man page Source code |
| pbmTrimProbes | Man page Source code |
| probeCols | Man page Source code |
| probeFilter | Man page Source code |
| probeFilter<- | Man page |
| probeFit | Man page Source code |
| probeTrim | Man page Source code |
| probeTrim<- | Man page |
| qqslope | Source code |
| readGPR | Man page Source code |
| show,PBMDesign-method | Man page |
| show,PBMExperiment-method | Man page |
| show-methods | Man page |
| spatiallyAdjust | Man page Source code |
| summarizeKmers | Man page Source code |
| tidy-PBMExperiment | Man page |
| tidy-SummarizedExperiment | Man page |
| tidy.PBMExperiment | Man page Source code |
| tidy.SummarizedExperiment | Man page Source code |
| uniqueKmers | Man page Source code |
| upbm | Man page |
| upbm-package | Man page |
| upbmPreprocess | Man page Source code |
