Files in pkimes/upbm
Tools for the analysis of universal protein binding microarrays

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/AllClasses.R R/AllGenerics.R R/PBM-accessors.R R/PBMDesign-constructor.R R/PBMDesign-show.R R/PBMExperiment-constructor.R R/PBMExperiment-show.R R/RcppExports.R R/backgroundSubtract.R R/checkStratify-helper.R R/cy3FitEmpirical.R R/cy3FitModel.R R/cy3GenerateRef.R R/cy3Normalize.R R/fitProbeDistribution.R R/gpr2PBMExperiment.R R/kmerFit-estimators.R R/kmerFit.R R/kmerTestAffinity.R R/kmerTestContrast.R R/kmerTestSpecificity.R R/mapKmers.R R/normalizeAcrossReplicates.R R/normalizeWithinReplicates.R R/pbmFilterProbes.R R/pbmTrimProbes.R R/probeFit.R R/spatiallyAdjust.R R/summarizeKmers.R R/tidy-PBMExperiment.R R/uniqueKmers.R R/upbm-package.R R/upbmPreprocess.R README.Rmd README.md man/PBMDesign-class.Rd man/PBMDesign-replace.Rd man/PBMDesign.Rd man/PBMExperiment-class.Rd man/PBMExperiment.Rd man/PBMclass-accessors.Rd man/backgroundSubtract.Rd man/cy3FitEmpirical.Rd man/cy3FitModel.Rd man/cy3GenerateRef.Rd man/cy3Normalize.Rd man/dl2_estimator.Rd man/dl_estimator.Rd
man/figures/upbm.png
man/fitProbeDistribution.Rd man/gpr2PBMExperiment.Rd man/kmerFit.Rd man/kmerTestAffinity.Rd man/kmerTestContrast.Rd man/kmerTestSpecificity.Rd man/mapKmers.Rd man/normalizeAcrossReplicates.Rd man/normalizeWithinReplicates.Rd man/pbmFilterProbes.Rd man/pbmTrimProbes.Rd man/probeFit.Rd man/readGPR.Rd man/show-methods.Rd man/spatiallyAdjust.Rd man/summarizeKmers.Rd man/tidy-PBMExperiment.Rd man/tidy-SummarizedExperiment.Rd man/uniqueKmers.Rd man/upbm-package.Rd man/upbmPreprocess.Rd
src/RcppExports.cpp
src/blockmedian.cpp
tests/testthat.R tests/testthat/test-classes.R tests/testthat/test-helpers.R tests/testthat/test-inference.R tests/testthat/test-preprocessing.R
vignettes/library.bib
vignettes/upbm-classes.Rmd vignettes/upbm-preprocessing.Rmd vignettes/upbm.Rmd
pkimes/upbm documentation built on Nov. 8, 2019, 9:33 a.m.