Description Usage Arguments Value Author(s) See Also
View source: R/PBMExperiment-constructor.R
Create a PBMExperiment object by directly specifying optional probe annotation
information (probeFilter
, probeTrim
, probeCols
), along with
a based SummarizedExperiment object containing probe intensity data.
1 2 3 4 5 6 7 | PBMExperiment(
...,
pbmDesign = NULL,
probeFilter = list(),
probeTrim = numeric(),
probeCols = c("Sequence", "probeID")
)
|
... |
an optional SummarizedExperiment containing PBM probe intensity data and corresponding annotations or parameters to be passed to the SummarizedExperiment constructor. |
pbmDesign |
an optional PBMDesign containing design information. If specified,
|
probeFilter |
an optional named list of probe filters to be used to subset
probes during data analysis steps. List names must correspond to columns in
rowData. List entries must be single-parameter functions to be called on the
corresponding column to return a logical vector of probes to keep (TRUE) or
drop (FALSE) during analysis. (default = |
probeTrim |
an optional integer vector of length 2 specifying start and end
positions in probe ‘Sequence’ to use in analysis steps. (default = |
probeCols |
an optional character vector of rowData column names corresponding
to probe design information. (default = |
PBMExperiment
object.
Patrick Kimes
PBMExperiment-class
, SummarizedExperiment-class
, gpr2PBMExperiment
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