API for plantformatics/Socrates
Analysis of scATAC-seq data

Global functions
buildMetaData	Man page Source code
callACRs	Man page Source code
callClusters	Man page Source code
cleanData	Man page Source code
coAccess	Man page Source code
convertSparseData	Man page Source code
countRemoveOrganelle	Man page Source code
detectDoublets	Man page Source code
estGeneActivity	Source code
filtDistClst	Man page Source code
filterDoublets	Man page Source code
filterSingle	Man page Source code
findCells	Man page Source code
generateMatrix	Man page Source code
getFDR	Man page Source code
isCell	Man page Source code
loadBEDandGenomeData	Man page Source code
loadSparseData	Man page Source code
logisticModel	Man page Source code
mergeQCdataRDS	Man page Source code
mergeSocObjects	Source code
mergeSocratesRDS	Man page Source code
plotUMAP	Man page Source code
plotUMAPstats	Source code
projectUMAP	Man page Source code
reduceDims	Man page Source code
regModel	Man page Source code
regModel2	Man page Source code
runCicero	Man page Source code
standardizeResiduals	Man page Source code
tfidf	Man page Source code
writeReadME	Man page Source code