loadSparseData: loadSparseData

In plantformatics/Socrates: Analysis of scATAC-seq data

loadSparseData

Description

This function loads the sparse matrix and meta data and returns a list - counts & meta

Usage

loadSparseData(input = NULL, meta = NULL, verbose = F)

Arguments

input	Path to sparse cell x peak text file in triplet format. Input data can be gzipped. Required.
meta	Path to meta data for cells in sparse cell x peak data set in tsv format. Headers and barcode/cellID rownames are required. Meta data can be gzipped. Providing meta data is highly recommended, but not required.
verbose	logical. Defaults to FALSE.

plantformatics/Socrates documentation built on April 3, 2025, 1:02 p.m.