standardizeResiduals: standardize or center residuals

In plantformatics/Socrates: Analysis of scATAC-seq data

standardize or center residuals

Description

iterate over residual matrix, scaling or centering values across cells for each ACR.

Usage

standardizeResiduals(obj, center = T, scale = F, bins = 1024, verbose = F)

Arguments

obj	list object containing slot 'residuals' output from logisticModel or regModel functions.
center	logical, whether or not to center residuals. Has no effect if scale is TRUE. Defaults to TRUE.
scale	logical, whether or not to center and standardize residuals. Defaults to TRUE.
bins	numeric, number of bins to split ACRs into. Defaults to 1024.
verbose	logical. Defaults to FALSE.

plantformatics/Socrates documentation built on April 3, 2025, 1:02 p.m.