buildMetaData_OG: buildMetaData_OG

In plantformatics/Socrates: Analysis of scATAC-seq data

buildMetaData_OG

Description

This function builds the meta data information for each barcode input from the Tn5 BED file. Execution of this function relies on several function from Bioconductor package GenomicRanges.

Usage

buildMetaData(obj, tss.window = 2000, organelle_scaffolds = NULL, verbose = T)

Arguments

obj	Object output from loadBEDandGenomeData. Required.
tss.window	Size of windows flanking TSS for estimating proportion of Tn5 integration sites near gene TSSs.
organelle_scaffolds	Organelle scaffolds vector. If given, remove annotations from Granges object which appear on organelles. Could potentially alter FRiP scores downstream as well as TSS
verbose	Logical. Whether to print information.

plantformatics/Socrates documentation built on April 3, 2025, 1:02 p.m.