Files in pmoulos/metaseqR2-local
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
.Rbuildignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/annotation.R
R/argcheck.R
R/count.R
R/deseq.R
R/export.R
R/external.R
R/filter.R
R/json.R
R/main.R
R/meta.R
R/metaseqR2-package.R
R/metaseqr2-data.R
R/noiseq.R
R/norm.R
R/plot.R
R/query.R
R/reportdb.R
R/sim.R
R/stat.R
R/tracks.R
R/util.R
R/zzz.R
README.md
data/hg19pvalues.rda
data/mm9GeneData.rda
inst/CITATION
inst/NEWS
inst/dna_loader.gif
inst/dummy.gtf
inst/extdata/C.bam
inst/extdata/T.bam
inst/extra/scvBiasCorrectionFits.rda
inst/metaseqr2_report.Rmd
inst/script/README.txt
inst/unitTests/test_estimate_aufc_weights.R
inst/unitTests/test_metaseqr.R
man/buildAnnotationDatabase.Rd
man/buildCustomAnnotation.Rd
man/combineBonferroni.Rd
man/combineHarmonic.Rd
man/combineMaxp.Rd
man/combineMinp.Rd
man/combineSimes.Rd
man/combineWeight.Rd
man/createSignalTracks.Rd
man/diagplotAvgFtd.Rd
man/diagplotBoxplot.Rd
man/diagplotCor.Rd
man/diagplotDeHeatmap.Rd
man/diagplotEdaseq.Rd
man/diagplotFiltered.Rd
man/diagplotFtd.Rd
man/diagplotMds.Rd
man/diagplotNoiseq.Rd
man/diagplotPairs.Rd
man/diagplotRoc.Rd
man/diagplotVenn.Rd
man/diagplotVolcano.Rd
man/downsampleCounts.Rd
man/estimateAufcWeights.Rd
man/estimateSimParams.Rd
man/getAnnotation.Rd
man/getDefaults.Rd
man/getInstalledAnnotations.Rd
man/getWeights.Rd
man/hg19pvalues.Rd
man/importCustomAnnotation.Rd
man/libsizeListMm9.Rd
man/loadAnnotation.Rd
man/makeSimDataSd.Rd
man/makeSimDataTcc.Rd
man/metaTest.Rd
man/metaseqr2.Rd
man/metaseqrPlot.Rd
man/mm9GeneCounts.Rd
man/normalizeAbsseq.Rd
man/normalizeDeseq.Rd
man/normalizeDeseq2.Rd
man/normalizeDss.Rd
man/normalizeEdaseq.Rd
man/normalizeEdger.Rd
man/normalizeNbpseq.Rd
man/normalizeNoiseq.Rd
man/read2count.Rd
man/readTargets.Rd
man/sampleListMm9.Rd
man/statAbsseq.Rd
man/statDeseq.Rd
man/statDeseq2.Rd
man/statDss.Rd
man/statEdger.Rd
man/statLimma.Rd
man/statNbpseq.Rd
man/statNoiseq.Rd
src/pval.c
tests/runTests.R
vignettes/metaseqr2-annotation.Rmd
vignettes/metaseqr2-statistics.Rmd
