getWeights: Get precalculated statistical test weights

View source: R/util.R

getWeightsR Documentation

Get precalculated statistical test weights

Description

This function returns pre-calculated weights for human, chimpanzee, mouse, fruitfly and arabidopsis based on the performance of simulated datasets estimated from real data from the ReCount database (http://bowtie-bio.sourceforge.net/recount/). Currently pre-calculated weights are available only when all six statistical tests are used and for normalization with EDASeq. For other combinations, use the estimateAufcWeights function.

Usage

    getWeights(org = c("human", "chimpanzee", "mouse",
        "fruitfly", "arabidopsis", "rat"))

Arguments

org

"human", "chimpanzee", "mouse", "fruitfly", "arabidopsis" or "rat".

Value

A named vector of convex weights.

Author(s)

Panagiotis Moulos

Examples

wh <- getWeights("human")

pmoulos/metaseqR2-local documentation built on May 21, 2024, 3:46 a.m.