SC2_Methods: List of level 2 single-concentration hit-call functions

In pmpsa-hpc/GladiaTOX: R Package for Processing High Content Screening data

List of level 2 single-concentration hit-call functions

Description

sc2_mthds returns a list of functions to be used during level 2 single-concentration processing.

Usage

sc2_mthds()

Details

The functions contained in the list returned by sc2_mthds return a list of expressions to be executed in the sc2 (not exported) function environment. The functions are described here for reference purposes, The sc2_mthds function is not exported, nor is it intended for use.

All available methods are described in the Available Methods section, listed by the function/method name.

Value

A list functions

Available Methods

More information about the level 2 single-concentration processing is available in the package vignette, "Pipeline_Overview."

bmad3

Add a cutoff value of 3*bmad.

pc20

Add a cutoff value of 20.

log2_1.2

Add a cutoff value of log2(1.2).

log10_1.2

Add a cutoff value of log10(1.2).

bmad5

Add a cutoff value of 5*bmad.

bmad6

Add a cutoff value of 6*bmad.

bmad10

Add a cutoff value of 10*bmad.

pc30orbmad3

Add a cutoff value of either 30 or 3*bmad, whichever is less.

Note

This function is not exported and is not intended to be used by the user.

See Also

sc2, Method functions to query what methods get applied to each acid

pmpsa-hpc/GladiaTOX documentation built on Sept. 1, 2023, 5:52 p.m.