query_funcs: Wrappers for sending queries and fetching results

In pmpsa-hpc/GladiaTOX: R Package for Processing High Content Screening data

Wrappers for sending queries and fetching results

Description

These functions send a query to the given database, and are the access point for all gtox functions that query or update the gtox database.

Usage

gtoxQuery(query, db = getOption("TCPL_DB"),
  drvr = getOption("TCPL_DRVR"))

gtoxSendQuery(query, db = getOption("TCPL_DB"),
  drvr = getOption("TCPL_DRVR"))

Arguments

query	Character of length 1, the query string
db	Character of length 1, the name of the gtox database
drvr	Character of length 1, which database driver to use

Details

Currently, the gtox package only supports the "MariaDB" and "SQLite" database drivers.

gtoxQuery returns a data.table object with the query results. gtoxSendQuery sends a query, but does not fetch any results, and returns 'TRUE' or the error message given by the database.

Value

None

Examples

## Perform query
gtoxSendQuery(paste0("SELECT * FROM assay_source"))


## Store the current config settings, so they can be reloaded at the end 
## of the examples
conf_store <- gtoxConfList()
gtoxConfDefault()

gtoxQuery("SELECT 'Hello World';")
gtoxQuery("SELECT * FROM assay;")
 
## Reset configuration
options(conf_store)

pmpsa-hpc/GladiaTOX documentation built on Sept. 1, 2023, 5:52 p.m.