ss_ecs_fit: Performs fitting of ECS traces

In poales/sharkeySpec: Handle and analyze SharkeySpec data

Performs fitting of ECS traces

Description

Given a single trace, generates vH+, gH+, ECSt, and optionally A520 baseline. Uses minpack.lm for fitting

Usage

ss_ecs_fit(dataframe, recalc_delta_a = F, graph = F, linFitCount = 5,
  nonlinFitCount = 35, remake = F, baselineStart = 50,
  baselineEnd = 99, abs520 = F, linadj = T, dirkstart = 100,
  highWeightVal = 1, highWeightCount = 15)

Arguments

dataframe	Single trace ECS data point.
recalc_delta_a	Do you wish to recalculate DeltaA? Calls ss_bookkeeping
graph	Boolean. Recreates the trace with fitting visualized. A list of graphs is returned.
linFitCount	Integer. Number of points used for linear fitting for vH+.
nonlinFitCount	Integer. Number of points used for nonlinear fitting for pmf and gH+.
remake	Boolean. Improves the detail of recreated graph. Data is untransformed.
baselineStart	Integer. Data point startpoint for recalculating deltaA
baselineEnd	Integer. Data point endpoint for recalculating DeltaA
abs520	Boolean. Would you like automatic calculation of baseline 520nm absorbance?
linadj	Boolean. Attempts to correct for signal drift by straightening out non-DIRK part of the trace
dirkstart	Integer. The data point count of the last illuminated point.
highWeightVal	Integer. The amount to weight high-weight points at the start of the dirk.
highWeightCount	Integer. The number of points to weight highly at the start of the dirk.

poales/sharkeySpec documentation built on July 22, 2022, 10:28 a.m.