ss_ecs_fit_all: Vectorized fitting of ECS data.

View source: R/ss_ecs_fit_all.R

ss_ecs_fit_allR Documentation

Vectorized fitting of ECS data.

Description

Functionally applies ecs_fit for a vectorized set of data Recommended application: ss_read_all_folder

Usage

ss_ecs_fit_all(ecs_list, recalc_delta_a = F, graph = F,
  linFitCount = 5, nonlinFitCount = 35, remake = F,
  baselineStart = 70, baselineEnd = 99, abs520 = F, linadj = T,
  dirkstart = 100, highWeightVal = 1, highWeightCount = 15)

Arguments

ecs_list

vector of ecs data to analyze

recalc_delta_a

Do you wish to recalculate DeltaA? Calls ss_bookkeeping

graph

Boolean. Recreates the trace with fitting visualized. A list of graphs is returned.

linFitCount

Number of points used for linear fitting for vH+.

nonlinFitCount

Number of points used for nonlinear fitting for pmf and gH+.

remake

Boolean. Improves the detail of recreated graph. Data is untransformed.

baselineStart

Baseline location for recalculating deltaA

baselineEnd

Baseline location for recalculating DeltaA

abs520

Would you like automatic calculation of baseline 520nm absorbance?

linadj

Boolean. Attempts to correct for signal drift by straightening out non-DIRK part of the trace

dirkstart

Integer. The last illuminated data point. Default: 100.

highWeightVal

Integer. The amount to weight high-weight points at the start of the dirk.

highWeightCount

Integer. The number of points to weight highly at the start of the dirk.


poales/sharkeySpec documentation built on July 22, 2022, 10:28 a.m.