cytosee: The cytosee Class

In poipou/CytoSEE: automatic computation and evaluation of cytometry data

Description

The cytosee class is the key of each step of cytosee analysis pipeline. It will records all perfermance and other information. including this dataset, raw data, plot object, analysis, etc. All that is needed to construct a cytosee dataset is a FCS file input.

Details

Slots for cytosee

Slots

raw.data:

"matrix", The raw exprs data from FCS file

raw.desc:

"list", The raw description data from FCS file

ident:

"factor", The identified cell types

transformation:

"matrix", scaled expression data

projectname:

"character", The name of your project

paras_in:

"list ", The input parameters

dim_red:

"list ", Reduced dimemsion data

pro.pre:

"list ", The pre-processing information

pro.clust:

"list ", clustering data info

pro.cores:

"characters ", the cores used for whole process

outermethod:

"list ", clustering data info

poipou/CytoSEE documentation built on May 13, 2019, 6:15 p.m.