We apply dimension reduction to those matrix which has more than paramenters
t-SNE
,largeVis
and SOM
was used
1 2 | cytosee_reduce_dim(data, n_core = NULL, sgd_batches = 0.5,
tsne_pca = TRUE, method = "PCA")
|
n_core |
how many cores you want to use |
sgd_batches |
input parameter for largeVis (refer largeVis for details) |
tsne_pca |
whether use pca in tsne |
object |
cytosee object |
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