PhenoCL: Automate Query phenotypes from Cell ontology

In poipou/CytoSEE: automatic computation and evaluation of cytometry data

Description

This function will automatically produce Phenotypes for each clusters and query the most possible result for them.

Usage

PhenoCL(data, ClusterID, MarkerName = c(), MaxLabelnum = 10)

Arguments

data	A matrix contain fcs data .
ClusterID	A data.frame contain the Cluster ID of each events in data.
MarkerName	character vectors for revising all the name of markers. Default is a empty matrix.
MaxLabelnum	A numbmic vector determine how many top labels will be display. Default is 10.

Value

A list of all most possible results of clusters.

Examples

# load the library
library(cytosee)
data(GvHD001)
data=GvHD001$data[,3,6]
ClusterID=GvHD001$label
MarkerName=c("CD4","CD8b","CD8","CD3")
result=PhenoCL(data,ClusterID,MarkerName)

poipou/CytoSEE documentation built on May 13, 2019, 6:15 p.m.