Files in pouryany/pathwayDisturbance
Pathway enrichment analysis of genomic using Causal Disturbance Analysis
.Rbuildignore
.gitignore
CADIA.Rproj
DESCRIPTION
NAMESPACE
R/CADIA-package.R
R/PathwayEnrichment.R
R/SourceSinkCentrality.R
R/geneReport.R
R/main.R
R/pathSampler.R
R/pathsReport.R
R/sysdata.rda
README.Rmd
README.md
bibliography.bib
data-raw/AdditionalData/EXCLUDEDPathways.csv
data-raw/AdditionalData/EnrichNetResults/Colorectad_tTDEG
data-raw/AdditionalData/EnrichNetResults/Colorectal_enrichnet_ranking_table.txt
data-raw/AdditionalData/EnrichNetResults/Gastric_enrichnet_ranking_table.txt
data-raw/AdditionalData/EnrichNetResults/Gastric_tTDEG
data-raw/AdditionalData/EnrichNetResults/OC_enrichnet_ranking_table.txt
data-raw/AdditionalData/EnrichNetResults/OC_tTDEG
data-raw/AdditionalData/EnrichNetResults/Reporting.R
data-raw/AdditionalData/EnrichNetResults/Supplemental Text.docx
data-raw/AdditionalData/INCLUDEDPathways.csv
data-raw/AdditionalData/allGeneNames
data-raw/AdditionalData/err_cdist
data-raw/AdditionalData/err_ora
data-raw/AdditionalData/err_ssc
data-raw/AdditionalData/pathlists.csv
data-raw/AdditionalData/pathwayDataNames
data-raw/AdditionalData/pathwaysData
data-raw/Causal_Disturbance_Analysis__A_novel_Graph_Centrality_Based_Method_for_Pathway_Enrichment_Analysis.pdf
data-raw/GuideMe.R
data-raw/KEGGPATHS/.Rapp.history
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data-raw/PathwaySelectionScript.R
data-raw/TestCodes/00-Plots.R
data-raw/TestCodes/01_ocMicrodataLMPvsSerous.R
data-raw/TestCodes/02_colorectalcancer.R
data-raw/TestCodes/03_Gastric.R
data-raw/TestCodes/04-RandomSampling.R
data-raw/TestCodes/05-DistributionTest.R
data/pathways.collection.names.rda
data/pathways.collection.rda
data/tT.rda
man/CADIA-package.Rd
man/cadia.paths.Rd
man/causalDisturbance.Rd
man/geneReport.Rd
man/pathSampler.Rd
man/processPathway.Rd
man/source.sink.centrality.Rd
vignettes/.gitignore
vignettes/bibliography.bib
vignettes/cadia-tutorial.Rmd
vignettes/cadia.Rmd
