Files in pouryany/pathwayDisturbance
Pathway enrichment analysis of genomic using Causal Disturbance Analysis

.DS_Store
.Rbuildignore
.gitignore
CADIA.Rproj
Colorectad_tTDEG
DESCRIPTION
Gastric_tTDEG
KEGGPATHS/.DS_Store
KEGGPATHS/.Rapp.history
KEGGPATHS/00010.xml
KEGGPATHS/00020.xml
KEGGPATHS/00030.xml
KEGGPATHS/00040.xml
KEGGPATHS/00051.xml
KEGGPATHS/00052.xml
KEGGPATHS/00053.xml
KEGGPATHS/00061.xml
KEGGPATHS/00062.xml
KEGGPATHS/00071.xml
KEGGPATHS/00072.xml
KEGGPATHS/00100.xml
KEGGPATHS/00120.xml
KEGGPATHS/00130.xml
KEGGPATHS/00140.xml
KEGGPATHS/00190.xml
KEGGPATHS/00220.xml
KEGGPATHS/00230.xml
KEGGPATHS/00232.xml
KEGGPATHS/00240.xml
KEGGPATHS/00250.xml
KEGGPATHS/00260.xml
KEGGPATHS/00270.xml
KEGGPATHS/00280.xml
KEGGPATHS/00290.xml
KEGGPATHS/00300.xml
KEGGPATHS/00310.xml
KEGGPATHS/00330.xml
KEGGPATHS/00340.xml
KEGGPATHS/00350.xml
KEGGPATHS/00360.xml
KEGGPATHS/00380.xml
KEGGPATHS/00400.xml
KEGGPATHS/00410.xml
KEGGPATHS/00430.xml
KEGGPATHS/00440.xml
KEGGPATHS/00450.xml
KEGGPATHS/00471.xml
KEGGPATHS/00472.xml
KEGGPATHS/00480.xml
KEGGPATHS/00500.xml
KEGGPATHS/00510.xml
KEGGPATHS/00511.xml
KEGGPATHS/00512.xml
KEGGPATHS/00514.xml
KEGGPATHS/00515.xml
KEGGPATHS/00520.xml
KEGGPATHS/00524.xml
KEGGPATHS/00531.xml
KEGGPATHS/00532.xml
KEGGPATHS/00533.xml
KEGGPATHS/00534.xml
KEGGPATHS/00561.xml
KEGGPATHS/00562.xml
KEGGPATHS/00563.xml
KEGGPATHS/00564.xml
KEGGPATHS/00565.xml
KEGGPATHS/00590.xml
KEGGPATHS/00591.xml
KEGGPATHS/00592.xml
KEGGPATHS/00600.xml
KEGGPATHS/00601.xml
KEGGPATHS/00603.xml
KEGGPATHS/00604.xml
KEGGPATHS/00620.xml
KEGGPATHS/00630.xml
KEGGPATHS/00640.xml
KEGGPATHS/00650.xml
KEGGPATHS/00670.xml
KEGGPATHS/00730.xml
KEGGPATHS/00740.xml
KEGGPATHS/00750.xml
KEGGPATHS/00760.xml
KEGGPATHS/00770.xml
KEGGPATHS/00780.xml
KEGGPATHS/00785.xml
KEGGPATHS/00790.xml
KEGGPATHS/00830.xml
KEGGPATHS/00860.xml
KEGGPATHS/00900.xml
KEGGPATHS/00910.xml
KEGGPATHS/00920.xml
KEGGPATHS/00970.xml
KEGGPATHS/00980.xml
KEGGPATHS/00982.xml
KEGGPATHS/00983.xml
KEGGPATHS/01040.xml
KEGGPATHS/01521.xml
KEGGPATHS/01522.xml
KEGGPATHS/01523.xml
KEGGPATHS/01524.xml
KEGGPATHS/02010.xml
KEGGPATHS/03008.xml
KEGGPATHS/03010.xml
KEGGPATHS/03013.xml
KEGGPATHS/03015.xml
KEGGPATHS/03018.xml
KEGGPATHS/03020.xml
KEGGPATHS/03022.xml
KEGGPATHS/03030.xml
KEGGPATHS/03040.xml
KEGGPATHS/03050.xml
KEGGPATHS/03060.xml
KEGGPATHS/03320.xml
KEGGPATHS/03410.xml
KEGGPATHS/03420.xml
KEGGPATHS/03430.xml
KEGGPATHS/03440.xml
KEGGPATHS/03450.xml
KEGGPATHS/03460.xml
KEGGPATHS/04010.xml
KEGGPATHS/04012.xml
KEGGPATHS/04014.xml
KEGGPATHS/04015.xml
KEGGPATHS/04020.xml
KEGGPATHS/04022.xml
KEGGPATHS/04024.xml
KEGGPATHS/04060.xml
KEGGPATHS/04062.xml
KEGGPATHS/04064.xml
KEGGPATHS/04066.xml
KEGGPATHS/04068.xml
KEGGPATHS/04070.xml
KEGGPATHS/04071.xml
KEGGPATHS/04072.xml
KEGGPATHS/04080.xml
KEGGPATHS/04110.xml
KEGGPATHS/04114.xml
KEGGPATHS/04115.xml
KEGGPATHS/04120.xml
KEGGPATHS/04122.xml
KEGGPATHS/04130.xml
KEGGPATHS/04140.xml
KEGGPATHS/04141.xml
KEGGPATHS/04142.xml
KEGGPATHS/04144.xml
KEGGPATHS/04145.xml
KEGGPATHS/04146.xml
KEGGPATHS/04150.xml
KEGGPATHS/04151.xml
KEGGPATHS/04152.xml
KEGGPATHS/04210.xml
KEGGPATHS/04211.xml
KEGGPATHS/04213.xml
KEGGPATHS/04215.xml
KEGGPATHS/04260.xml
KEGGPATHS/04261.xml
KEGGPATHS/04270.xml
KEGGPATHS/04310.xml
KEGGPATHS/04320.xml
KEGGPATHS/04330.xml
KEGGPATHS/04340.xml
KEGGPATHS/04350.xml
KEGGPATHS/04360.xml
KEGGPATHS/04370.xml
KEGGPATHS/04380.xml
KEGGPATHS/04390.xml
KEGGPATHS/04392.xml
KEGGPATHS/04510.xml
KEGGPATHS/04512.xml
KEGGPATHS/04514.xml
KEGGPATHS/04520.xml
KEGGPATHS/04530.xml
KEGGPATHS/04540.xml
KEGGPATHS/04550.xml
KEGGPATHS/04610.xml
KEGGPATHS/04611.xml
KEGGPATHS/04612.xml
KEGGPATHS/04614.xml
KEGGPATHS/04620.xml
KEGGPATHS/04621.xml
KEGGPATHS/04622.xml
KEGGPATHS/04623.xml
KEGGPATHS/04630.xml
KEGGPATHS/04640.xml
KEGGPATHS/04650.xml
KEGGPATHS/04657.xml
KEGGPATHS/04658.xml
KEGGPATHS/04659.xml
KEGGPATHS/04660.xml
KEGGPATHS/04662.xml
KEGGPATHS/04664.xml
KEGGPATHS/04666.xml
KEGGPATHS/04668.xml
KEGGPATHS/04670.xml
KEGGPATHS/04672.xml
KEGGPATHS/04710.xml
KEGGPATHS/04713.xml
KEGGPATHS/04720.xml
KEGGPATHS/04721.xml
KEGGPATHS/04722.xml
KEGGPATHS/04723.xml
KEGGPATHS/04724.xml
KEGGPATHS/04725.xml
KEGGPATHS/04726.xml
KEGGPATHS/04727.xml
KEGGPATHS/04728.xml
KEGGPATHS/04730.xml
KEGGPATHS/04740.xml
KEGGPATHS/04742.xml
KEGGPATHS/04744.xml
KEGGPATHS/04750.xml
KEGGPATHS/04810.xml
KEGGPATHS/04910.xml
KEGGPATHS/04911.xml
KEGGPATHS/04912.xml
KEGGPATHS/04913.xml
KEGGPATHS/04914.xml
KEGGPATHS/04915.xml
KEGGPATHS/04916.xml
KEGGPATHS/04917.xml
KEGGPATHS/04918.xml
KEGGPATHS/04919.xml
KEGGPATHS/04920.xml
KEGGPATHS/04921.xml
KEGGPATHS/04922.xml
KEGGPATHS/04923.xml
KEGGPATHS/04924.xml
KEGGPATHS/04925.xml
KEGGPATHS/04930.xml
KEGGPATHS/04931.xml
KEGGPATHS/04932.xml
KEGGPATHS/04933.xml
KEGGPATHS/04940.xml
KEGGPATHS/04950.xml
KEGGPATHS/04960.xml
KEGGPATHS/04961.xml
KEGGPATHS/04962.xml
KEGGPATHS/04964.xml
KEGGPATHS/04966.xml
KEGGPATHS/04970.xml
KEGGPATHS/04971.xml
KEGGPATHS/04972.xml
KEGGPATHS/04973.xml
KEGGPATHS/04974.xml
KEGGPATHS/04975.xml
KEGGPATHS/04976.xml
KEGGPATHS/04977.xml
KEGGPATHS/04978.xml
KEGGPATHS/05010.xml
KEGGPATHS/05012.xml
KEGGPATHS/05014.xml
KEGGPATHS/05016.xml
KEGGPATHS/05020.xml
KEGGPATHS/05030.xml
KEGGPATHS/05031.xml
KEGGPATHS/05032.xml
KEGGPATHS/05033.xml
KEGGPATHS/05034.xml
KEGGPATHS/05100.xml
KEGGPATHS/05110.xml
KEGGPATHS/05120.xml
KEGGPATHS/05130.xml
KEGGPATHS/05131.xml
KEGGPATHS/05132.xml
KEGGPATHS/05133.xml
KEGGPATHS/05134.xml
KEGGPATHS/05140.xml
KEGGPATHS/05142.xml
KEGGPATHS/05143.xml
KEGGPATHS/05144.xml
KEGGPATHS/05145.xml
KEGGPATHS/05146.xml
KEGGPATHS/05150.xml
KEGGPATHS/05152.xml
KEGGPATHS/05160.xml
KEGGPATHS/05161.xml
KEGGPATHS/05162.xml
KEGGPATHS/05164.xml
KEGGPATHS/05166.xml
KEGGPATHS/05168.xml
KEGGPATHS/05169.xml
KEGGPATHS/05200.xml
KEGGPATHS/05202.xml
KEGGPATHS/05203.xml
KEGGPATHS/05204.xml
KEGGPATHS/05205.xml
KEGGPATHS/05206.xml
KEGGPATHS/05210.xml
KEGGPATHS/05211.xml
KEGGPATHS/05212.xml
KEGGPATHS/05213.xml
KEGGPATHS/05214.xml
KEGGPATHS/05215.xml
KEGGPATHS/05216.xml
KEGGPATHS/05217.xml
KEGGPATHS/05218.xml
KEGGPATHS/05219.xml
KEGGPATHS/05220.xml
KEGGPATHS/05221.xml
KEGGPATHS/05222.xml
KEGGPATHS/05223.xml
KEGGPATHS/05224.xml
KEGGPATHS/05230.xml
KEGGPATHS/05231.xml
KEGGPATHS/05310.xml
KEGGPATHS/05320.xml
KEGGPATHS/05321.xml
KEGGPATHS/05322.xml
KEGGPATHS/05323.xml
KEGGPATHS/05330.xml
KEGGPATHS/05332.xml
KEGGPATHS/05340.xml
KEGGPATHS/05410.xml
KEGGPATHS/05412.xml
KEGGPATHS/05414.xml
KEGGPATHS/05416.xml
KEGGPATHS/BADBADPATHWAYS.xlsx
KEGGPATHS/GoodPathways.csv
KEGGPATHS/PathwaySelectionScript.R
KEGGPATHS/badpathways.csv
KEGGPATHS/causalDisruption2.R
KEGGPATHS/cleanPathNames
KEGGPATHS/keggRefGenes
KEGGPATHS/pathNames
KEGGPATHS/pathlists.csv
KEGGPATHS/pathwayDataNames
KEGGPATHS/pathwaysData
KEGGPATHS/tTDEG
KEGGPATHS/~$dy Text ACM BCB 2017.docx
NAMESPACE
NewTests/BreastCancer Epithelial.R NewTests/HeadandNeck.R NewTests/LungCancer.R NewTests/PanCancer.R NewTests/PanCancer2.R NewTests/PanCancer3WorksTricky.R NewTests/Parkinson.R NewTests/SomeCLL_lookintoitLAter.R NewTests/Thyroid.R NewTests/Thyroid2.R NewTests/ThyroidTricky.R NewTests/WorksTrickyGastric2.R NewTests/WorksTrickyLungCancer2.R NewTests/Works_colorectalcancer.R NewTests/Works_ocMicrodataLMPvsSerous.R NewTests/Works_ok_breastCancer.R NewTests/Works_tricky_BreastStromal.R NewTests/Works_tricky_Thyroid.R NewTests/bladderCancer.R NewTests/cervicalCancer.R NewTests/liverCancer.R NewTests/oralCancer.R OptimalBeta.pdf
R/.DS_Store
R/disturbanceCalculatorNewPath.R R/main.R R/newpathCentrality.R R/newpathSampler.R R/pathwayDist.R
R/sysdata.rda
SomeCode/.DS_Store
SomeCode/00-PlottingCodes.R SomeCode/01_ocMicrodataLMPvsSerous.R SomeCode/02_colorectalcancer.R SomeCode/03_Gastric.R SomeCode/DistributionTest.R
SomeCode/EnrichNetResults/Colorectad_tTDEG
SomeCode/EnrichNetResults/Colorectal_enrichnet_ranking_table.txt
SomeCode/EnrichNetResults/Gastric_enrichnet_ranking_table.txt
SomeCode/EnrichNetResults/Gastric_tTDEG
SomeCode/EnrichNetResults/OC_enrichnet_ranking_table.txt
SomeCode/EnrichNetResults/OC_tTDEG
SomeCode/EnrichNetResults/Reporting.R
SomeCode/EnrichNetResults/Supplemental Text.docx
SomeCode/EnrichNetResults/~$pplemental Text.docx
SomeCode/PlottingCodes.R SomeCode/Untitled.R SomeCode/Untitled2.R SomeCode/disturbanceCalculator2.R SomeCode/disturbanceCalculatorKatz.R SomeCode/disturbanceCalculatorNewPath2.R
SomeCode/err_cdist
SomeCode/err_ora
SomeCode/errrr
SomeCode/geneExtractorKEGG.R SomeCode/glioDataAnalysis.R SomeCode/microDataAnalysis.R SomeCode/newpathSampler.R SomeCode/ocDataAnalysis.R SomeCode/ocMicroDataAnalysis.R SomeCode/oclmpDataTest.R SomeCode/parkDataAnalysis.R SomeCode/pathCount2.R SomeCode/pathCountKatz.R
SomeCode/pathwayDataNames
SomeCode/pathwaysData
SomeCode/processDAG.R SomeCode/someMatrixProcessing.R SomeCode/textCleaning.R
data-raw/pathwayDataNames
data-raw/pathwaysData
data/pathways.collection.names.rda
data/pathways.collection.rda
man/causalDisturbance.Rd man/newpath.centrality.Rd man/pathSampler.newPath.Rd man/pathSampler.tester.Rd man/processPathway.Rd
tTDEG
vignettes/CADIA.Rmd
pouryany/pathwayDisturbance documentation built on Oct. 12, 2018, 2:08 p.m.