processPathway: Calculates some information regarding the pathways
In pouryany/pathwayDisturbance: Pathway enrichment analysis of genomic using Causal Disturbance Analysis

Calculates some information regarding the pathways

1	processPathway(pGraph, Name, deIDs, allIDs, iter, alpha, beta, statEval)

`pGraph`	a GraphNEL object of a KEGG pathway
`Name`	the pathway name
`iter`	the number of iterations for causal disturbance
`alpha`	the dampening factor for Source/Sink Centrality
`beta`	the relative Source vs Sink factor
`statEval`	Choose 1 for product-based, 0 for summation-based
`pathID`	KEGG ID of an input pathway
`deKIDs`	list of differentially expressed genes
`allKIDs`	list of all genes with their associated KEGG IDs
`keggRef`	list of reference genes from KEGG

pouryany/pathwayDisturbance documentation built on Sept. 1, 2020, 12:13 a.m.

pouryany/pathwayDisturbance index

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