Pathway enrichment analysis of genomic using PathwayDisturbance Algorithm

causalDisturbance | Calculates enrichment analysis of KEGG pathways based on... |

DAGprocessor | Finds an underlying DAG of a given graph pathway Uses a... |

geneKEGGListExtractor | Extracts all the genes in a given list of pathways |

pathCounter | Find the total number of paths in a DAG |

pathCounter.katz | Find the total number of paths in a DAG |

pathSampler.cdist | Calculates the distrution of pathway disturbance |

pathSampler.katz | Calculates the distrution of pathway disturbance |

pathSampler.newPath | Calculates the distrution of pathway disturbance |

processPathway | Calculates some information regarding the pathways |

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