Description Usage Arguments Value
Calculates the distribution of pathway disturbance
1 | pathSampler(inputGraph, deKID, iterationNo, alpha, beta, statEval = 1)
|
inputGraph |
A graphNEL object of a pathway |
deKID |
The name of the nodes in the subset of interest. e.g. DEG |
alpha |
the dampening factor for Source/Sink Centrality |
beta |
the relative Source vs Sink factor |
statEval |
Choose 1 for product-based, 0 for summation-based |
interationNo |
number of rounds of sampling |
iter |
the number of iterations for causal disturbance |
the probability of observing a subset with a higher aggeregate score
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