Man pages for prafols/rMSI
MSI Tools
| AppendNormalizationCoefs | AppendNormalizationCoefs: Appends a new normalization... |
| AverageSpectrum | AverageSpectrum. Computes the average spectrum of a whole... |
| BaseSpectrum | BaseSpectrum. Computes the base spectrum of a whole rMSI... |
| builRasterImageFromCols | Build a image slice from specified datacube columns. |
| builRasterImageFromMass | Build a image slice from specified datacube masses. |
| CalcMassAxisBinSize | CalcMassAxisBinSize. |
| ConvertBin2rMSIimg | ConvertBin2rMSIimg. |
| ConvertrMSIimg2Bin | ConvertrMSIimg2Bin. |
| CparseBrukerXML | ParseBrukerXML. |
| CreateEmptyImage | Create an empty rMSI object with defined mass axis and size. |
| CreateSubDataset | CreateSubDataset. |
| DeleteRamdisk | Remove an rMSI object ramdisk |
| dot-controlled_loadAbort | .controlled_loadAbort. |
| dot-saveGgraphicsPlot2PngFile | Save a gWidgets2::ggraphic widget to a png file. A file... |
| export_imzML | export_imzML |
| ffVector2Matrix | ffVector2Matrix. |
| fixImzMLDuplicates | fixImzMLDuplicates. Delete duplicates and possible zero-drop... |
| getCoordsFromIds | getCoordsFromIds Obtain images coords from a set of Ids. |
| getCubeRowFromCoords | Obtain the cube index and cube row of a given image coords. |
| getCubeRowFromIds | Obtain the cube index and cube row of a given image Ids. |
| getIdsFromCoords | Obtain the image Identifiers from a given set of images... |
| getIdsFromMotorCoords | Obtain the image Identifiers from a given set of images motor... |
| getImageColsFromMass | Obtain the rMSI datacube columns corresponding to a mass. |
| importBrukerXmassImg | Import a MSI dataset from Bruker XMASS folder and a XML file. |
| importBrukerXMASSImg_Wizard | Import a MSI dataset from Bruker XMASS folder and a XML file... |
| import_imzML | import_imzML. |
| import_rMSItar | import_rMSItar. |
| insertRasterImageAtCols | Inserts a image at specified Cols of a rMSI object. |
| insertRasterImageAtMass | Inserts a image at specified mass of a rMSI object. |
| loadImageSliceFromCols | Load a image slice from a specified datacube columns. |
| loadImageSliceFromMass | Load a image slice from a specified mass and tolerance. |
| loadImgChunkFromCoords | Loads a part of a ff data img in RAM. |
| loadImgChunkFromCube | Loads a part of a ff data img in RAM. |
| loadImgChunkFromIds | Loads a part of a ff data img in RAM. |
| LoadMsiData | Load rMSI data from a compressed tar. |
| LoadTwoMsImages | LoadTwoMsImages |
| MergeMassAxis | MergeMassAxis. |
| MSIWindow | Open the GUI to explore a MS image |
| NormalizeByAcqDegradation | NormalizeByAcqDegradation: Normalizes an rMSI image to... |
| NormalizeByAcqDegradationOnTargetPeaks | NormalizeByAcqDegradationOnTargetPeaks: Calculates the... |
| NormalizeMAX | NormalizeMAX: Calculates the MAX normalizatin of each pixel... |
| NormalizeRMS | NormalizeRMS: Calculates the RMS normalizatin of each pixel... |
| NormalizeTargetPeaks | NormalizeTargetPeaks: Calculates the normalization of each... |
| NormalizeTIC | NormalizeTIC: Calculates the TIC normalizatin of each pixel... |
| OpenMSI | Open a MS image from Hdd directly allowing the user to chose... |
| ParseBrukerXML | ParseBrukerXML. |
| PlotClusterImage | PlotClusterImage. Plot a segmentation image with the... |
| plotMassImageByPeak | Plot a mass image of a up to 3 selected ions. |
| plotParamAcqOrdered | plotParamAcqOrdered. |
| plotRGBDataOnImg | plotRGBDataOnImg: Function to plot generic data on a RGB... |
| plotSpectra | Plot Mass Spectra in a interactive way. |
| PlotTICImage | PlotTICImage. |
| PlotValues | PlotValues. |
| plotVariousMassImagesByPeak | Plots a image using various MS image objects and the same... |
| ReadBrukerRoiXML | ReadBrukerRoiXML. |
| remap2ImageCoords | remap2ImageCoords. |
| rMSI | rMSI |
| ROIAverageSpectra | ROIAverageSpectra. |
| ROIAverageSpectraByIds | ROIAverageSpectraByIds. |
| saveImageSliceAtCols | Overwrite an image slice of an rMSI object. |
| saveImageSliceAtMass | Overwrite an image slice of an rMSI object. |
| saveImgChunkAtCoords | Stores a data matrix to a part of ff data img. |
| saveImgChunkAtIds | Stores a data matrix to a part of ff data img. |
| saveImgChunkToCube | Save a data matrix to a whole cube in rMSI object |
| SaveMsiData | Save a rMSI object to disk in a compressed .tar file. |
| SortIDsByAcquisition | SortIDsByAcquisition: Order the rMSI pixel IDs according the... |
| uuid_timebased | uuid. |
